Basic Information:

  VIRBase ID:  

VHID00184976

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H20:  MIMAT0014702          ERF:  NM_001312656     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H20	ERF
miRBase Accession/Entrez ID	MIMAT0014702	2077
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CHYTS//CRS4//PE-2//PE2

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ERF	chr19:42751728-42751729(-) m6A 3'UTR       24981863 chr19:42751735-42751736(-) m6A 3'UTR       24981863 chr19:42751743-42751744(-) m6A 3'UTR       24981863 chr19:42751789-42751790(-) m6A 3'UTR       25456834//24981863//27773535 chr19:42751870-42751871(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535 chr19:42751875-42751876(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535 chr19:42751924-42751925(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535 chr19:42752073-42752074(-) m6A 3'UTR       24209618//24981863//27773535 chr19:42752088-42752089(-) m6A 3'UTR       24209618//24981863//27773535 chr19:42752284-42752285(-) m6A 3'UTR       24284625//24209618//24981863//27773535 chr19:42752474-42752475(-) m6A 3'UTR       24284625//24209618 chr19:42752599-42752600(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr19:42752623-42752624(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr19:42752734-42752735(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr19:42752791-42752792(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr19:42753194-42753195(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr19:42753337-42753338(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960 chr19:42753534-42753535(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27773536 chr19:42753669-42753670(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27773536//22575960 chr19:42753790-42753791(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960 chr19:42754021-42754022(-) m6A CDS//exon       24284625//26404942//27773535 chr19:42754062-42754063(-) m6A CDS//exon       26404942//27773535 chr19:42754563-42754564(-) m6A 5'UTR//CDS//exon       27773535 chr19:42754587-42754588(-) m6A 5'UTR//CDS//exon       27773535 chr19:42755571-42755572(-) m6A exon//intron       24209618//27371828 chr19:42759134-42759135(-) m6A CDS//exon       24209618//24981863//27371828//27773536//22575960 chr19:42759144-42759145(-) m6A CDS//exon       24209618//24981863//27371828//27773536//22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ERF	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H20
Interactor2: ERF

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg