Detail Information

Basic Information:


  VIRBase ID:  

VHID00184880

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H20:           CDR2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H20 CDR2
miRBase
Accession/Entrez ID		 MIMAT0014702 1039
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - CDR62//Yo

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CDR2
chr16:22382424(-) A-I      intronic
chr16:22368626(-) A-I      intronic
chr16:22383366(-) A-I      intronic
chr16:22383367(-) A-I      intronic
chr16:22376004(-) A-I      intronic
chr16:22383394(-) A-I      intronic
chr16:22383369(-) A-I      intronic
chr16:22383330(-) A-I      intronic
chr16:22383320(-) A-I      intronic
chr16:22375992(-) A-I      intronic
chr16:22361266(-) A-I      intronic
chr16:22375362(-) A-I      intronic
chr16:22374544(-) A-I      intronic
chr16:22374519(-) A-I      intronic
chr16:22373361(-) A-I      intronic
chr16:22374393(-) A-I      intronic
chr16:22374350(-) A-I      intronic
chr16:22379821(-) A-I      intronic
chr16:22367808(-) A-I      intronic
chr16:22379616(-) A-I      intronic
chr16:22378630(-) A-I      intronic
chr16:22378466(-) A-I      intronic
chr16:22373355(-) A-I      intronic
chr16:22372250(-) A-I      intronic
chr16:22372248(-) A-I      intronic
chr16:22372244(-) A-I      intronic
chr16:22372239(-) A-I      intronic
chr16:22372208(-) A-I      intronic
chr16:22372199(-) A-I      intronic
chr16:22372182(-) A-I      intronic
chr16:22368661(-) A-I      intronic
chr16:22368583(-) A-I      intronic
chr16:22367974(-) A-I      intronic
chr16:22367908(-) A-I      intronic
chr16:22367871(-) A-I      intronic
chr16:22367773(-) A-I      intronic
chr16:22367734(-) A-I      intronic
chr16:22367721(-) A-I      intronic
chr16:22367709(-) A-I      intronic
chr16:22363551(-) A-I      intronic
chr16:22363547(-) A-I      intronic
chr16:22363435(-) A-I      intronic
chr16:22363410(-) A-I      intronic
chr16:22361347(-) A-I      intronic
chr16:22361293(-) A-I      intronic
chr16:22361284(-) A-I      intronic
chr16:22363561(-) A-I      intronic
chr16:22378483(-) A-I      intronic
chr16:22375338(-) A-I      intronic
chr16:22378496(-) A-I      intronic
chr16:22363489(-) A-I      intronic
chr16:22363488(-) A-I      intronic
chr16:22382449(-) A-I      intronic
chr16:22382432(-) A-I      intronic
chr16:22368516(-) A-I      intronic
chr16:22374127(-) A-I      intronic
chr16:22367747(-) A-I      intronic
chr16:22383463(-) A-I      intronic
chr16:22383370(-) A-I      intronic
chr16:22378573(-) A-I      intronic
chr16:22383288(-) A-I      intronic
chr16:22374457(-) A-I      intronic
chr16:22375958(-) A-I      intronic
chr16:22375302(-) A-I      intronic
chr16:22378621(-) A-I      intronic
chr16:22374183(-) A-I      intronic
chr16:22374551(-) A-I      intronic
chr16:22361388(-) A-I      intronic
chr16:22379360(-) A-I      intronic
chr16:22379284(-) A-I      intronic
chr16:22379297(-) A-I      intronic
chr16:22383265(-) A-I      intronic
chr16:22361401(-) A-I      intronic
chr16:22368589(-) A-I      intronic
chr16:22370623(-) A-I      intronic
chr16:22383373(-) A-I      intronic
chr16:22383379(-) A-I      intronic
chr16:22383245(-) A-I      intronic
chr16:22375996(-) A-I      intronic
chr16:22363451(-) A-I      intronic
chr16:22375523(-) A-I      intronic
chr16:22370641(-) A-I      intronic
chr16:22383224(-) A-I      intronic
chr16:22378581(-) A-I      intronic
chr16:22378615(-) A-I      intronic
chr16:22382344(-) A-I      intronic
chr16:22361265(-) A-I      intronic
chr16:22380594(-) A-I      intronic
chr16:22375539(-) A-I      intronic
chr16:22380510(-) A-I      intronic
chr16:22383384(-) A-I      intronic
chr16:22375467(-) A-I      intronic
chr16:22373446(-) A-I      intronic
chr16:22378452(-) A-I      intronic
chr16:22378576(-) A-I      intronic
chr16:22375434(-) A-I      intronic
chr16:22368588(-) A-I      intronic
chr16:22383464(-) A-I      intronic
chr16:22376062(-) A-I      intronic
chr16:22374157(-) A-I      intronic
chr16:22361253(-) A-I      intronic
chr16:22380522(-) A-I      intronic
chr16:22368515(-) A-I      intronic
chr16:22383480(-) A-I      intronic
chr16:22375460(-) A-I      intronic
chr16:22370559(-) A-I      intronic
chr16:22363491(-) A-I      intronic
chr16:22372176(-) A-I      intronic
chr16:22375399(-) A-I      intronic
chr16:22379807(-) A-I      intronic
chr16:22367991(-) A-I      intronic
chr16:22363425(-) A-I      intronic
chr16:22361427(-) A-I      intronic
chr16:22375927(-) A-I      intronic
chr16:22379730(-) A-I      intronic
chr16:22375967(-) A-I      intronic
chr16:22382366(-) A-I      intronic
chr16:22374505(-) A-I      intronic
chr16:22364174(-) A-I      intronic
chr16:22361299(-) A-I      intronic
chr16:22374151(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CDR2
chr16:22383464(-) A-I intron -    22327324
chr16:22375539(-) A-G intron -    22484847
chr16:22375996(-) A-G intron -    22484847
chr16:22383464(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CDR2
chr16:22357283-22357284(-) m6A 3'UTR       27773535
chr16:22357319-22357320(-) m6A 3'UTR       27773535
chr16:22357330-22357331(-) m6A 3'UTR       27773535
chr16:22357362-22357363(-) m6A 3'UTR       27773535
chr16:22357729-22357730(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr16:22357738-22357739(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr16:22357852-22357853(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr16:22357870-22357871(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr16:22357941-22357942(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:22358020-22358021(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:22358039-22358040(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:22358067-22358068(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:22358210-22358211(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr16:22358224-22358225(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr16:22358280-22358281(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr16:22358317-22358318(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr16:22358324-22358325(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr16:22358344-22358345(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr16:22358438-22358439(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr16:22358487-22358488(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr16:22358509-22358510(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr16:22358535-22358536(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr16:22358540-22358541(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr16:22358601-22358602(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr16:22358633-22358634(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr16:22358662-22358663(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr16:22358820-22358821(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:22358903-22358904(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:22358954-22358955(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:22358961-22358962(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:22359049-22359050(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:22360563-22360564(-) m6A 3'UTR//intron       24284625//24981863//27371828//22608085
chr16:22360646-22360647(-) m6A 3'UTR//CDS       24284625//24981863//27773535//27371828//22608085
chr16:22360735-22360736(-) m6A 3'UTR//CDS       24284625//24981863//27773535//27371828//22608085
chr16:22361073-22361074(-) m6A 3'UTR//CDS       24981863//27773535
chr16:22361083-22361084(-) m6A 3'UTR//CDS       24981863//27773535
chr16:22361107-22361108(-) m6A 3'UTR//CDS       24981863//27773535
chr16:22361128-22361129(-) m6A CDS       24981863//27773535
chr16:22361149-22361150(-) m6A 5'UTR//CDS       27773535
chr16:22376274-22376275(-) m6A 5'UTR//CDS//exon//intron       27773535
chr16:22376289-22376290(-) m6A 5'UTR//CDS//exon//intron       27773535
chr16:22376305-22376306(-) m6A 5'UTR//CDS//exon//intron       24209618//27773535
chr16:22385562-22385563(-) m6A CDS//intron       24209618//27773535
chr16:22385616-22385617(-) m6A CDS//intron       24284625//24209618//27773535//27371828
chr16:22385640-22385641(-) m6A 5'UTR//intron       24284625//24209618//27773535//27371828
chr16:22385883-22385884(-) m6A 5'UTR//intron       24209618//24981863//27371828//27773536
chr16:22385900-22385901(-) m6A 5'UTR//intron       24209618//24981863//27371828//27773536
chr16:22386241-22386242(-) m6A 5'UTR//intron       24981863//27371828
chr16:22430171-22430172(-) m6A intron       27773535
chr16:22430386-22430387(-) m6A intron       27773535
chr16:22430516-22430517(-) m6A intron       24284625//24209618//24981863//27773535//22608085
chr16:22430527-22430528(-) m6A intron       24284625//24209618//24981863//27773535//22608085
chr16:22430660-22430661(-) m6A intron       24284625//24981863//27773535//22608085
chr16:22430668-22430669(-) m6A intron       24284625//24981863//27773535//22608085
chr16:22430703-22430704(-) m6A intron       24284625//24981863//27773535//22608085
chr16:22430754-22430755(-) m6A intron       27773535
chr16:22430818-22430819(-) m6A intron       27773535
chr16:22430827-22430828(-) m6A intron       27773535
chr16:22430833-22430834(-) m6A intron       27773535
chr16:22431064-22431065(-) m6A intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr16:22431081-22431082(-) m6A intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr16:22431130-22431131(-) m6A intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr16:22431183-22431184(-) m6A intron       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr16:22431235-22431236(-) m6A intron       24284625//25456834//24981863//27773535//27371828//22608085
chr16:22431304-22431305(-) m6A intron       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr16:22431337-22431338(-) m6A intron       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr16:22431381-22431382(-) m6A intron       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr16:22431486-22431487(-) m6A intron       24284625//24981863//27773535
chr16:22431545-22431546(-) m6A intron       24284625//24981863//27773535
chr16:22431609-22431610(-) m6A intron       24284625//24981863
chr16:22431620-22431621(-) m6A intron       24284625//24981863
chr16:22431655-22431656(-) m6A intron       24284625//24981863//22608085
chr16:22431832-22431833(-) m6A intron       24284625//25456834//24981863
chr16:22447109-22447110(-) m6A exon       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CDR2
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H20
Interactor2: CDR2

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

Starting a new search, please wait ...