Basic Information:

  VIRBase ID:  

VHID00183935

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H13:  MIMAT0014700          GALNT13:  NM_001301627     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H13	GALNT13
miRBase Accession/Entrez ID	MIMAT0014700	114805
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	GalNAc-T13

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GALNT13	chr2:155067915(+) A-I      intronic chr2:154927272(+) A-I      intronic chr2:155067901(+) A-I      intronic chr2:155293543(+) A-I      intronic chr2:155293534(+) A-I      intronic chr2:155293544(+) A-I      intronic chr2:155067925(+) A-I      intronic chr2:154927270(+) A-I      intronic chr2:154875986(+) A-I      intronic chr2:155112303(+) A-I      intronic chr2:155112340(+) A-I      intronic chr2:155116535(+) A-I      intronic chr2:155112315(+) A-I      intronic chr2:155112413(+) A-I      intronic chr2:155112379(+) A-I      intronic chr2:155112386(+) A-I      intronic chr2:155175162(+) A-I      intronic chr2:155112409(+) A-I      intronic chr2:155112383(+) A-I      intronic chr2:155112445(+) A-I      intronic chr2:155112419(+) A-I      intronic chr2:155112310(+) A-I      intronic chr2:155112523(+) A-I      intronic chr2:155112403(+) A-I      intronic chr2:155112414(+) A-I      intronic chr2:155112287(+) A-I      intronic chr2:155170017(+) A-I      intronic chr2:155112451(+) A-I      intronic chr2:155112331(+) A-I      intronic chr2:155112350(+) A-I      intronic chr2:155112332(+) A-I      intronic chr2:155173614(+) A-I      intronic chr2:155170212(+) A-I      intronic chr2:155175169(+) A-I      intronic chr2:155170176(+) A-I      intronic chr2:155173560(+) A-I      intronic chr2:154982910(+) A-I      intronic chr2:155068160(+) A-I      intronic chr2:155022798(+) A-I      intronic chr2:154916955(+) A-I      intronic chr2:155173566(+) A-I      intronic chr2:154770845(+) A-I      intronic chr2:154876029(+) A-I      intronic chr2:155032868(+) A-I      intronic chr2:154873114(+) A-I      intronic chr2:154876073(+) A-I      intronic chr2:155175056(+) A-I      intronic chr2:155063053(+) A-I      intronic chr2:154999052(+) A-I      intronic chr2:155175059(+) A-I      intronic chr2:155109009(+) A-I      intronic chr2:154850089(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	GALNT13	chr2:155174974(+) A-I intron -    15545495 chr2:155175056(+) A-I intron -    15545495 chr2:155175059(+) A-I intron -    15545495 chr2:155175162(+) A-I intron -    15545495 chr2:155175169(+) A-I intron -    15545495 chr2:155112287(+) A-I intron -    22028664 chr2:155112303(+) A-I intron -    22028664 chr2:155112310(+) A-I intron -    22028664 chr2:155112315(+) A-I intron -    22028664 chr2:155112331(+) A-I intron -    22028664 chr2:155112332(+) A-I intron -    22028664 chr2:155112340(+) A-I intron -    22028664 chr2:155112350(+) A-I intron -    22028664 chr2:155112379(+) A-I intron -    22028664 chr2:155112383(+) A-I intron -    22028664 chr2:155112386(+) A-I intron -    22028664 chr2:155112403(+) A-I intron -    22028664 chr2:155112409(+) A-I intron -    22028664 chr2:155112413(+) A-I intron -    22028664 chr2:155112414(+) A-I intron -    22028664 chr2:155112419(+) A-I intron -    22028664 chr2:155112445(+) A-I intron -    22028664 chr2:155112451(+) A-I intron -    22028664 chr2:155112523(+) A-I intron -    22028664

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GALNT13	chr2:155143173-155143174(+) m6A intron       22608085 chr2:155143201-155143202(+) m6A intron       22608085 chr2:155143242-155143243(+) m6A intron       22608085 chr2:155143262-155143263(+) m6A intron       22608085 chr2:155143291-155143292(+) m6A intron       22608085 chr2:155143779-155143780(+) m6A intron       22608085 chr2:155143818-155143819(+) m6A intron       25456834//22608085 chr2:155143855-155143856(+) m6A intron       22608085 chr2:155306924-155306925(+) m6A 3'UTR//CDS//exon       24981863 chr2:155306966-155306967(+) m6A 3'UTR//CDS//exon       24981863//22608085 chr2:155306980-155306981(+) m6A 3'UTR//CDS//exon       24981863//22608085 chr2:155307004-155307005(+) m6A 3'UTR//CDS//exon       24981863//22608085 chr2:155307043-155307044(+) m6A 3'UTR//CDS//exon       22608085 chr2:155307774-155307775(+) m6A 3'UTR       24981863 chr2:155307813-155307814(+) m6A 3'UTR       24981863 chr2:155307818-155307819(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GALNT13	Exosome Blood     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H13
Interactor2: GALNT13

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg