Basic Information:

  VIRBase ID:  

VHID00183915

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H13:  MIMAT0014700          CDCA5:  NM_080668     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H13	CDCA5
miRBase Accession/Entrez ID	MIMAT0014700	113130
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SORORIN

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CDCA5	chr11:64849322(-) A-I      intronic chr11:64848824(-) A-I      intronic chr11:64849423(-) A-I      intronic chr11:64850152(-) A-I      intronic chr11:64850153(-) A-I      intronic chr11:64850137(-) A-I      intronic chr11:64850075(-) A-I      intronic chr11:64848091(-) A-I      intronic chr11:64849391(-) A-I      intronic chr11:64848013(-) A-I      intronic chr11:64850160(-) A-I      intronic chr11:64849328(-) A-I      intronic chr11:64850073(-) A-I      intronic chr11:64848060(-) A-I      intronic chr11:64850063(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CDCA5	chr11:64849328(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CDCA5	chr11:64833936-64833937(-) m6A CDS       27371828//27773536 chr11:64836058-64836059(-) m6A CDS//exon       24981863//27773535//22608085 chr11:64844999-64845000(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr11:64845091-64845092(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085 chr11:64845121-64845122(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085 chr11:64845134-64845135(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27371828//22608085 chr11:64845183-64845184(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27371828//22608085 chr11:64845241-64845242(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27371828//22608085 chr11:64846289-64846290(-) m6A 3'UTR//intron       24284625//27773535 chr11:64846445-64846446(-) m6A 3'UTR//intron       24284625//24981863//27773535 chr11:64846506-64846507(-) m6A 3'UTR//intron       24284625//24981863//27773535//22575960 chr11:64846550-64846551(-) m6A 3'UTR//intron       24284625//24981863//27773535//22575960 chr11:64846860-64846861(-) m6A 3'UTR//CDS//exon//intron       24284625//24981863//27773535//27371828//27773536 chr11:64846897-64846898(-) m6A 3'UTR//CDS//exon//intron       24284625//27773535//27371828//27773536 chr11:64846941-64846942(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//27773535//27371828//27773536//22575960 chr11:64846975-64846976(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr11:64847051-64847052(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr11:64847098-64847099(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22608085 chr11:64847146-64847147(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//26404942//27773535//27371828//27773536//22608085 chr11:64847189-64847190(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//27773535//27371828//22608085 chr11:64847200-64847201(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//27773535//27371828//22608085 chr11:64850779-64850780(-) m6A exon//intron       27773535 chr11:64851133-64851134(-) m6A CDS//exon       - chr11:64851585-64851586(-) m6A 5'UTR//exon       24981863 chr11:64851608-64851609(-) m6A 5'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CDCA5	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H13
Interactor2: CDCA5

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg