Detail Information

Basic Information:


  VIRBase ID:  

VHID00183802

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H13:           RAB2B:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H13 RAB2B
miRBase
Accession/Entrez ID		 MIMAT0014700 84932
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RAB2B
chr14:21939739(-) A-I      intronic
chr14:21942337(-) A-I      intronic
chr14:21939733(-) A-I      intronic
chr14:21942268(-) A-I      intronic
chr14:21942267(-) A-I      intronic
chr14:21942263(-) A-I      intronic
chr14:21939730(-) A-I      intronic
chr14:21928878(-) A-I      3'UTR
chr14:21939596(-) A-I      intronic
chr14:21939572(-) A-I      intronic
chr14:21938244(-) A-I      intronic
chr14:21928966(-) A-I      3'UTR
chr14:21928687(-) A-I      3'UTR
chr14:21928976(-) A-I      3'UTR
chr14:21942250(-) A-I      intronic
chr14:21928856(-) A-I      3'UTR
chr14:21942281(-) A-I      intronic
chr14:21942311(-) A-I      intronic
chr14:21928481(-) A-I      NonSyn:Stp->Trp
chr14:21928501(-) A-I      NonSyn:Ser->Gly
chr14:21929880(-) A-I      intronic
chr14:21929868(-) A-I      intronic
chr14:21938322(-) A-I      intronic
chr14:21934624(-) A-I      intronic
chr14:21933117(-) A-I      intronic
chr14:21938272(-) A-I      intronic
chr14:21935162(-) A-I      intronic
chr14:21939102(-) A-I      intronic
chr14:21933151(-) A-I      intronic
chr14:21941129(-) A-I      intronic
chr14:21938307(-) A-I      intronic
chr14:21938226(-) A-I      intronic
chr14:21932477(-) A-I      intronic
chr14:21930720(-) A-I      intronic
chr14:21939682(-) A-I      intronic
chr14:21935171(-) A-I      intronic
chr14:21942049(-) A-I      intronic
chr14:21929892(-) A-I      intronic
chr14:21939750(-) A-I      intronic
chr14:21938118(-) A-I      intronic
chr14:21935338(-) A-I      intronic
chr14:21935210(-) A-I      intronic
chr14:21941116(-) A-I      intronic
chr14:21942059(-) A-I      intronic
chr14:21932367(-) A-I      intronic
chr14:21940029(-) A-I      intronic
chr14:21940017(-) A-I      intronic
chr14:21940013(-) A-I      intronic
chr14:21939141(-) A-I      intronic
chr14:21939967(-) A-I      intronic
chr14:21939946(-) A-I      intronic
chr14:21939573(-) A-I      intronic
chr14:21939571(-) A-I      intronic
chr14:21929878(-) A-I      intronic
chr14:21939250(-) A-I      intronic
chr14:21939104(-) A-I      intronic
chr14:21935204(-) A-I      intronic
chr14:21939087(-) A-I      intronic
chr14:21939862(-) A-I      intronic
chr14:21938384(-) A-I      intronic
chr14:21934615(-) A-I      intronic
chr14:21938308(-) A-I      intronic
chr14:21939246(-) A-I      intronic
chr14:21938200(-) A-I      intronic
chr14:21938282(-) A-I      intronic
chr14:21938276(-) A-I      intronic
chr14:21941159(-) A-I      intronic
chr14:21928869(-) A-I      3'UTR
chr14:21928865(-) A-I      3'UTR
chr14:21928894(-) A-I      3'UTR
chr14:21928576(-) A-I      3'UTR
chr14:21928841(-) A-I      3'UTR
chr14:21928838(-) A-I      3'UTR
chr14:21928516(-) A-I      3'UTR
chr14:21928697(-) A-I      3'UTR
chr14:21928729(-) A-I      3'UTR
chr14:21928609(-) A-I      3'UTR
chr14:21928911(-) A-I      3'UTR
chr14:21928625(-) A-I      3'UTR
chr14:21928681(-) A-I      3'UTR
chr14:21928910(-) A-I      3'UTR
chr14:21928881(-) A-I      3'UTR
chr14:21928620(-) A-I      3'UTR
chr14:21928606(-) A-I      3'UTR
chr14:21928739(-) A-I      3'UTR
chr14:21928711(-) A-I      3'UTR
chr14:21928564(-) A-I      3'UTR
chr14:21928604(-) A-I      3'UTR
chr14:21928802(-) A-I      3'UTR
chr14:21929028(-) A-I      3'UTR
chr14:21928941(-) A-I      3'UTR
chr14:21928572(-) A-I      3'UTR
chr14:21928587(-) A-I      3'UTR
chr14:21928662(-) A-I      3'UTR
chr14:21928975(-) A-I      3'UTR
chr14:21929022(-) A-I      3'UTR
chr14:21928851(-) A-I      3'UTR
chr14:21928661(-) A-I      3'UTR
chr14:21928552(-) A-I      3'UTR
chr14:21928905(-) A-I      3'UTR
chr14:21928532(-) A-I      3'UTR
chr14:21928845(-) A-I      3'UTR
chr14:21928578(-) A-I      3'UTR
chr14:21928502(-) A-I      Syn:Gln->Gln
chr14:21928490(-) A-I      Syn:Leu->Leu
chr14:21932960(-) A-I      intronic
chr14:21939210(-) A-I      intronic
chr14:21938249(-) A-I      intronic
chr14:21939655(-) A-I      intronic
chr14:21942228(-) A-I      intronic
chr14:21939557(-) A-I      intronic
chr14:21931478(-) A-I      intronic
chr14:21932520(-) A-I      intronic
chr14:21940008(-) A-I      intronic
chr14:21939873(-) A-I      intronic
chr14:21939558(-) A-I      intronic
chr14:21939708(-) A-I      intronic
chr14:21933062(-) A-I      intronic
chr14:21930836(-) A-I      intronic
chr14:21940107(-) A-I      intronic
chr14:21941107(-) A-I      intronic
chr14:21932316(-) A-I      intronic
chr14:21939755(-) A-I      intronic
chr14:21930886(-) A-I      intronic
chr14:21942007(-) A-I      intronic
chr14:21933122(-) A-I      intronic
chr14:21935177(-) A-I      intronic
chr14:21939629(-) A-I      intronic
chr14:21939963(-) A-I      intronic
chr14:21939065(-) A-I      intronic
chr14:21939064(-) A-I      intronic
chr14:21929971(-) A-I      intronic
chr14:21942316(-) A-I      intronic
chr14:21934476(-) A-I      intronic
chr14:21939691(-) A-I      intronic
chr14:21933077(-) A-I      intronic
chr14:21939619(-) A-I      intronic
chr14:21930915(-) A-I      intronic
chr14:21939584(-) A-I      intronic
chr14:21941874(-) A-I      intronic
chr14:21939318(-) A-I      intronic
chr14:21939293(-) A-I      intronic
chr14:21940081(-) A-I      intronic
chr14:21931622(-) A-I      intronic
chr14:21933040(-) A-I      intronic
chr14:21939249(-) A-I      intronic
chr14:21939608(-) A-I      intronic
chr14:21940007(-) A-I      intronic
chr14:21942222(-) A-I      intronic
chr14:21938346(-) A-I      intronic
chr14:21931544(-) A-I      intronic
chr14:21943753(-) A-I      intronic
chr14:21939546(-) A-I      intronic
chr14:21939291(-) A-I      intronic
chr14:21932959(-) A-I      intronic
chr14:21941982(-) A-I      intronic
chr14:21935261(-) A-I      intronic
chr14:21942004(-) A-I      intronic
chr14:21931580(-) A-I      intronic
chr14:21939665(-) A-I      intronic
chr14:21939931(-) A-I      intronic
chr14:21939593(-) A-I      intronic
chr14:21938183(-) A-I      intronic
chr14:21941871(-) A-I      intronic
chr14:21938178(-) A-I      intronic
chr14:21941133(-) A-I      intronic
chr14:21939144(-) A-I      intronic
chr14:21943687(-) A-I      intronic
chr14:21939052(-) A-I      intronic
chr14:21930877(-) A-I      intronic
chr14:21939973(-) A-I      intronic
chr14:21939972(-) A-I      intronic
chr14:21940028(-) A-I      intronic
chr14:21938313(-) A-I      intronic
chr14:21941915(-) A-I      intronic
chr14:21938207(-) A-I      intronic
chr14:21939724(-) A-I      intronic
chr14:21939220(-) A-I      intronic
chr14:21938250(-) A-I      intronic
chr14:21939695(-) A-I      intronic
chr14:21928706(-) A-I      3'UTR
chr14:21928840(-) A-I      3'UTR
chr14:21929045(-) A-I      3'UTR
chr14:21929004(-) A-I      3'UTR
chr14:21928658(-) A-I      3'UTR
chr14:21928700(-) A-I      3'UTR
chr14:21928888(-) A-I      3'UTR
chr14:21928960(-) A-I      3'UTR
chr14:21929036(-) A-I      3'UTR
chr14:21928999(-) A-I      3'UTR
chr14:21928622(-) A-I      3'UTR
chr14:21928940(-) A-I      3'UTR
chr14:21928998(-) A-I      3'UTR
chr14:21928901(-) A-I      3'UTR
chr14:21929060(-) A-I      3'UTR
chr14:21928955(-) A-I      3'UTR
chr14:21928948(-) A-I      3'UTR
chr14:21929044(-) A-I      3'UTR
chr14:21928996(-) A-I      3'UTR
chr14:21928644(-) A-I      3'UTR
chr14:21928675(-) A-I      3'UTR
chr14:21929014(-) A-I      3'UTR
chr14:21928889(-) A-I      3'UTR
chr14:21928945(-) A-I      3'UTR
chr14:21928884(-) A-I      3'UTR
chr14:21928846(-) A-I      3'UTR
chr14:21928857(-) A-I      3'UTR
chr14:21928942(-) A-I      3'UTR
chr14:21928943(-) A-I      3'UTR
chr14:21928524(-) A-I      3'UTR
chr14:21928668(-) A-I      3'UTR
chr14:21928985(-) A-I      3'UTR
chr14:21928835(-) A-I      3'UTR
chr14:21928561(-) A-I      3'UTR
chr14:21928632(-) A-I      3'UTR
chr14:21928682(-) A-I      3'UTR
chr14:21928937(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RAB2B
chr14:21928490(-) A-I exon 3'UTR    22327324
chr14:21928501(-) A-I exon 3'UTR    22327324
chr14:21928622(-) A-I exon 3'UTR    21960545   //22327324
chr14:21928632(-) A-I exon 3'UTR    22327324
chr14:21928682(-) A-I exon 3'UTR    22327324
chr14:21928700(-) A-I exon 3'UTR    22327324
chr14:21928706(-) A-I exon 3'UTR    22327324
chr14:21928840(-) A-I exon 3'UTR    21960545   //22327324
chr14:21928846(-) A-I exon 3'UTR    22327324
chr14:21928851(-) A-I exon 3'UTR    21960545   //22327324
chr14:21928910(-) A-I exon 3'UTR    21960545   //22327324
chr14:21928911(-) A-I exon 3'UTR    22327324
chr14:21928996(-) A-I exon 3'UTR    22327324
chr14:21928998(-) A-I exon 3'UTR    21960545   //22327324
chr14:21929014(-) A-I exon 3'UTR    22327324
chr14:21929044(-) A-I exon 3'UTR    21960545   //22327324
chr14:21928501(-) A-G exon 3'UTR    21725310
chr14:21928490(-) A-G exon 3'UTR    22484847
chr14:21928502(-) A-G exon 3'UTR    22484847
chr14:21928578(-) A-G exon 3'UTR    22484847
chr14:21928622(-) A-G exon 3'UTR    22484847
chr14:21928632(-) A-G exon 3'UTR    22484847
chr14:21928658(-) A-G exon 3'UTR    22484847
chr14:21928668(-) A-G exon 3'UTR    22484847
chr14:21928681(-) A-G exon 3'UTR    22484847
chr14:21928682(-) A-G exon 3'UTR    22484847
chr14:21928700(-) A-G exon 3'UTR    22484847
chr14:21928840(-) A-G exon 3'UTR    22484847
chr14:21928846(-) A-G exon 3'UTR    22484847
chr14:21928851(-) A-G exon 3'UTR    22484847
chr14:21928865(-) A-G exon 3'UTR    22484847
chr14:21928889(-) A-G exon 3'UTR    22484847
chr14:21928910(-) A-G exon 3'UTR    22484847
chr14:21928911(-) A-G exon 3'UTR    22484847
chr14:21928940(-) A-G exon 3'UTR    22484847
chr14:21928941(-) A-G exon 3'UTR    22484847
chr14:21928955(-) A-G exon 3'UTR    22484847
chr14:21928996(-) A-G exon 3'UTR    22484847
chr14:21928998(-) A-G exon 3'UTR    22484847
chr14:21928999(-) A-G exon 3'UTR    22484847
chr14:21929014(-) A-G exon 3'UTR    22484847
chr14:21929044(-) A-G exon 3'UTR    22484847
chr14:21929045(-) A-G exon 3'UTR    22484847
chr14:21939220(-) A-G intron -    22484847
chr14:21939318(-) A-G intron -    22484847
chr14:21939584(-) A-G intron -    22484847
chr14:21939655(-) A-G intron -    22484847
chr14:21939682(-) A-G intron -    22484847
chr14:21939755(-) A-G intron -    22484847
chr14:21939972(-) A-G intron -    22484847
chr14:21939973(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RAB2B
chr14:21927559-21927560(-) m6A 3'UTR       27773535
chr14:21927566-21927567(-) m6A 3'UTR       27773535
chr14:21927578-21927579(-) m6A 3'UTR       27773535
chr14:21927596-21927597(-) m6A 3'UTR       27773535
chr14:21929340-21929341(-) m6A 3'UTR//intron       24981863
chr14:21929353-21929354(-) m6A 3'UTR//intron       24981863
chr14:21929391-21929392(-) m6A 3'UTR//CDS//intron       24981863
chr14:21929411-21929412(-) m6A 3'UTR//CDS//exon       24981863
chr14:21942745-21942746(-) m6A exon//intron       -
chr14:21942937-21942938(-) m6A exon//intron       27773535
chr14:21944990-21944991(-) m6A CDS//exon       24981863//27773535
chr14:21945049-21945050(-) m6A 5'UTR//exon       24981863
chr14:21945056-21945057(-) m6A 5'UTR//exon       24981863
chr14:21945119-21945120(-) m1A 5'UTR       26863196

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RAB2B
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H13
Interactor2: RAB2B

Evidence Support:


Prediction-Evidence cRep//miRanda//Targetscan
Support Database RepTar//VmiReg

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