Detail Information

Basic Information:


  VIRBase ID:  

VHID00183719

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H13:           KATNAL1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H13 KATNAL1
miRBase
Accession/Entrez ID		 MIMAT0014700 84056
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR KATNAL1
chr13:30870539(-) A-I      intronic
chr13:30870501(-) A-I      intronic
chr13:30870510(-) A-I      intronic
chr13:30870538(-) A-I      intronic
chr13:30870570(-) A-I      intronic
chr13:30870579(-) A-I      intronic
chr13:30870544(-) A-I      intronic
chr13:30870549(-) A-I      intronic
chr13:30876182(-) A-I      intronic
chr13:30794896(-) A-I      intronic
chr13:30827087(-) A-I      intronic
chr13:30875385(-) A-I      intronic
chr13:30795068(-) A-I      intronic
chr13:30875322(-) A-I      intronic
chr13:30875379(-) A-I      intronic
chr13:30794372(-) A-I      intronic
chr13:30794380(-) A-I      intronic
chr13:30878545(-) A-I      intronic
chr13:30878475(-) A-I      intronic
chr13:30794406(-) A-I      intronic
chr13:30801050(-) A-I      intronic
chr13:30877698(-) A-I      intronic
chr13:30802956(-) A-I      intronic
chr13:30794988(-) A-I      intronic
chr13:30858247(-) A-I      intronic
chr13:30794489(-) A-I      intronic
chr13:30875313(-) A-I      intronic
chr13:30794969(-) A-I      intronic
chr13:30826981(-) A-I      intronic
chr13:30826973(-) A-I      intronic
chr13:30813545(-) A-I      intronic
chr13:30826909(-) A-I      intronic
chr13:30794515(-) A-I      intronic
chr13:30827156(-) A-I      intronic
chr13:30877640(-) A-I      intronic
chr13:30876188(-) A-I      intronic
chr13:30813412(-) A-I      intronic
chr13:30833365(-) A-I      intronic
chr13:30803743(-) A-I      intronic
chr13:30875383(-) A-I      intronic
chr13:30878547(-) A-I      intronic
chr13:30803733(-) A-I      intronic
chr13:30833355(-) A-I      intronic
chr13:30795078(-) A-I      intronic
chr13:30827022(-) A-I      intronic
chr13:30794997(-) A-I      intronic
chr13:30876173(-) A-I      intronic
chr13:30876186(-) A-I      intronic
chr13:30781821(-) A-I      3'UTR
chr13:30794482(-) A-I      intronic
chr13:30866109(-) A-I      intronic
chr13:30875395(-) A-I      intronic
chr13:30814002(-) A-I      intronic
chr13:30826980(-) A-I      intronic
chr13:30803606(-) A-I      intronic
chr13:30866089(-) A-I      intronic
chr13:30803747(-) A-I      intronic
chr13:30877650(-) A-I      intronic
chr13:30876260(-) A-I      intronic
chr13:30794560(-) A-I      intronic
chr13:30876254(-) A-I      intronic
chr13:30794961(-) A-I      intronic
chr13:30858278(-) A-I      intronic
chr13:30794490(-) A-I      intronic
chr13:30813996(-) A-I      intronic
chr13:30858229(-) A-I      intronic
chr13:30803107(-) A-I      intronic
chr13:30795005(-) A-I      intronic
chr13:30840294(-) A-I      intronic
chr13:30813425(-) A-I      intronic
chr13:30803798(-) A-I      intronic
chr13:30802955(-) A-I      intronic
chr13:30877668(-) A-I      intronic
chr13:30827021(-) A-I      intronic
chr13:30858270(-) A-I      intronic
chr13:30803690(-) A-I      intronic
chr13:30827690(-) A-I      intronic
chr13:30803178(-) A-I      intronic
chr13:30795063(-) A-I      intronic
chr13:30796125(-) A-I      intronic
chr13:30827642(-) A-I      intronic
chr13:30827083(-) A-I      intronic
chr13:30814000(-) A-I      intronic
chr13:30803612(-) A-I      intronic
chr13:30878418(-) A-I      intronic
chr13:30803028(-) A-I      intronic
chr13:30794435(-) A-I      intronic
chr13:30840304(-) A-I      intronic
chr13:30877696(-) A-I      intronic
chr13:30813898(-) A-I      intronic
chr13:30840257(-) A-I      intronic
chr13:30795016(-) A-I      intronic
chr13:30794449(-) A-I      intronic
chr13:30794965(-) A-I      intronic
chr13:30795001(-) A-I      intronic
chr13:30780254(-) A-I      3'UTR
chr13:30780166(-) A-I      3'UTR

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase KATNAL1
chr13:30779925-30779926(-) m6A 3'UTR       27773535
chr13:30779951-30779952(-) m6A 3'UTR       27773535
chr13:30780002-30780003(-) m6A 3'UTR       27773535
chr13:30780050-30780051(-) m6A 3'UTR       27773535
chr13:30780214-30780215(-) m6A 3'UTR       -
chr13:30780477-30780478(-) m6A 3'UTR       27773535
chr13:30782252-30782253(-) m6A 3'UTR       27773535
chr13:30782301-30782302(-) m6A 3'UTR       27773535
chr13:30782722-30782723(-) m6A CDS       24284625//24981863//22608085
chr13:30782770-30782771(-) m6A CDS       24284625//24981863//22608085
chr13:30782796-30782797(-) m6A CDS       24284625//24981863//22608085
chr13:30815125-30815126(-) m6A CDS       27773535
chr13:30829611-30829612(-) m6A CDS       24209618//24981863//27773535//22608085
chr13:30829617-30829618(-) m6A CDS       24209618//24981863//27773535//22608085
chr13:30829673-30829674(-) m6A CDS       24209618//24981863//27773535
chr13:30857883-30857884(-) Am CDS       -
chr13:30881161-30881162(-) m6A 5'UTR//intron       24981863
chr13:30881167-30881168(-) m6A 5'UTR//intron       24981863
chr13:30881178-30881179(-) m6A 5'UTR//intron       24981863
chr13:30881481-30881482(-) m6A 5'UTR       24209618//24981863
chr13:30881504-30881505(-) m6A 5'UTR       24209618
chr13:30881555-30881556(-) m6A 5'UTR       24209618

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate KATNAL1
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H13
Interactor2: KATNAL1

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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