Basic Information:

  VIRBase ID:  

VHID00183716

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H13:  MIMAT0014700          B3GNT5:  NM_032047     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H13	B3GNT5
miRBase Accession/Entrez ID	MIMAT0014700	84002
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	B3GN-T5//beta3Gn-T5

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	B3GNT5	chr3:183006475(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	B3GNT5	chr3:182971137-182971138(+) m6A 5'UTR//exon       25456834//24981863 chr3:182971187-182971188(+) m6A 5'UTR//exon       25456834 chr3:182971209-182971210(+) m6A 5'UTR//exon       25456834 chr3:182971230-182971231(+) m6A 5'UTR//exon       - chr3:182971252-182971253(+) m6A 5'UTR//exon       - chr3:182987427-182987428(+) m6A 5'UTR//exon//intron       24981863//22608085 chr3:182987437-182987438(+) m6A 5'UTR//exon//intron       24981863//26404942//22608085 chr3:182987458-182987459(+) m6A 5'UTR//exon//intron       24981863//26404942//22608085 chr3:182987494-182987495(+) m6A 5'UTR//exon//intron       24209618//24981863//26404942//22608085 chr3:182987510-182987511(+) m6A 5'UTR//exon//intron       24209618//25456834//24981863//26404942//22608085 chr3:182987553-182987554(+) m6A 5'UTR//exon//intron       24209618//25456834//24981863//26404942//22608085 chr3:182987570-182987571(+) m6A 5'UTR//exon//intron       24209618//25456834//24981863//26404942//22608085 chr3:182987684-182987685(+) m6A CDS//intron       24981863//22608085 chr3:182987871-182987872(+) m6A CDS//intron       24981863//26404942//22608085 chr3:182987884-182987885(+) m6A CDS//intron       24209618//24981863//26404942//22608085 chr3:182987964-182987965(+) m6A CDS//intron       24209618//24981863//26404942//22608085 chr3:182987982-182987983(+) m6A CDS//intron       24209618//24981863//22608085 chr3:182988008-182988009(+) m6A CDS//intron       24209618//25456834//24981863//22608085 chr3:182988020-182988021(+) m6A CDS//intron       24209618//25456834//24981863//22608085 chr3:182988064-182988065(+) m6A CDS//intron       24209618//25456834//24981863//26404942//22608085 chr3:182988218-182988219(+) m6A CDS//intron       24981863//26404942//22608085 chr3:182988235-182988236(+) m6A CDS//intron       24981863//26404942//22608085 chr3:182988405-182988406(+) m6A CDS//intron       24209618//24981863//26404942//22608085 chr3:182988481-182988482(+) m6A CDS//intron       24981863//26404942//22608085 chr3:182988510-182988511(+) m6A CDS//intron       24981863//26404942//22608085 chr3:182988557-182988558(+) m6A CDS//intron       24981863//26404942//22608085 chr3:182988577-182988578(+) m6A CDS//intron       24981863//26404942//22608085 chr3:182988612-182988613(+) m6A CDS//intron       24981863//26404942//22608085 chr3:182988691-182988692(+) m6A CDS//intron       24981863//26404942//22608085 chr3:182988764-182988765(+) m6A 3'UTR//intron       22608085 chr3:182988779-182988780(+) m6A 3'UTR//intron       22608085 chr3:182991158-182991159(+) m6A 3'UTR//intron       - chr3:183005291-183005292(+) m6A exon//intron       - chr3:183005302-183005303(+) m6A exon//intron       - chr3:183005333-183005334(+) m6A exon//intron       - chr3:183005529-183005530(+) m6A exon       24981863 chr3:183005583-183005584(+) m6A exon       24981863 chr3:183005629-183005630(+) m6A exon       24981863 chr3:183005645-183005646(+) m6A exon       24981863 chr3:183014444-183014445(+) m6A exon       - chr3:183014580-183014581(+) m6A exon       24981863 chr3:183014638-183014639(+) m6A exon       - chr3:183014792-183014793(+) m6A exon       - chr3:183014804-183014805(+) m6A exon       24981863 chr3:183014891-183014892(+) m6A exon       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	B3GNT5	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H13
Interactor2: B3GNT5

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg