Basic Information:

  VIRBase ID:  

VHID00183507

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H13:  MIMAT0014700          NABP1:  NR_045623     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H13	NABP1
miRBase Accession/Entrez ID	MIMAT0014700	64859
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	OBFC2A//SOSS-B2//SSB2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NABP1	chr2:192549815(+) A-I      intronic chr2:192549814(+) A-I      intronic chr2:192549771(+) A-I      intronic chr2:192549751(+) A-I      intronic chr2:192549762(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NABP1	chr2:192542946-192542947(+) m6A 5'UTR//exon       24209618//24981863 chr2:192542980-192542981(+) m6A 5'UTR//intron       24209618 chr2:192548514-192548515(+) m6A 3'UTR//CDS//exon       27773535 chr2:192548522-192548523(+) m6A 3'UTR//CDS//exon       27773535 chr2:192548966-192548967(+) m6A 3'UTR//CDS//exon       27773535 chr2:192549014-192549015(+) m6A 3'UTR//CDS//exon//intron       27773535 chr2:192549622-192549623(+) m6A exon//intron       27773535 chr2:192550358-192550359(+) m6A 3'UTR//CDS       24981863 chr2:192550397-192550398(+) m6A 3'UTR//CDS       24981863//26404942 chr2:192550422-192550423(+) m6A 3'UTR//CDS       24981863//26404942 chr2:192550437-192550438(+) m6A 3'UTR//CDS       24981863//26404942 chr2:192550468-192550469(+) m6A 3'UTR//CDS       24981863//26404942 chr2:192550543-192550544(+) m6A 3'UTR       24981863//26404942 chr2:192554537-192554538(+) m6A 3'UTR       - chr2:192554560-192554561(+) m6A 3'UTR       - chr2:192554601-192554602(+) m6A 3'UTR       24981863 chr2:192554618-192554619(+) m6A 3'UTR       24981863 chr2:192554625-192554626(+) m6A 3'UTR       24981863 chr2:192554650-192554651(+) m6A 3'UTR       24981863 chr2:192558037-192558038(+) m6A 3'UTR       - chr2:192560448-192560449(+) m6A 3'UTR       - chr2:192560475-192560476(+) m6A 3'UTR       - chr2:192560481-192560482(+) m6A 3'UTR       - chr2:192560534-192560535(+) m6A 3'UTR       24981863 chr2:192560545-192560546(+) m6A 3'UTR       24981863 chr2:192560557-192560558(+) m6A 3'UTR       24981863 chr2:192560734-192560735(+) m6A 3'UTR       24981863//22608085 chr2:192560809-192560810(+) m6A 3'UTR       24981863//22608085 chr2:192560820-192560821(+) m6A 3'UTR       24981863//22608085 chr2:192560874-192560875(+) m6A 3'UTR       24981863//22608085 chr2:192560902-192560903(+) m6A 3'UTR       24981863//22608085 chr2:192560925-192560926(+) m6A 3'UTR       24981863//22608085 chr2:192560976-192560977(+) m6A 3'UTR       24981863//26404942//22608085 chr2:192560987-192560988(+) m6A 3'UTR       24981863//26404942//22608085 chr2:192561109-192561110(+) m6A 3'UTR       24981863//26404942//22575960//22608085 chr2:192561130-192561131(+) m6A 3'UTR       24981863//26404942//22575960//22608085 chr2:192561140-192561141(+) m6A 3'UTR       24981863//26404942//22575960//22608085 chr2:192561176-192561177(+) m6A 3'UTR       24981863//26404942//22575960//22608085 chr2:192561218-192561219(+) m6A 3'UTR       24981863//26404942//22575960//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NABP1	Chromatin K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Human normal lymphocyte line (AHH-1)     28388563 Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H13
Interactor2: NABP1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg