Basic Information:

  VIRBase ID:  

VHID00183109

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H13:  MIMAT0014700          EPDR1:  NM_001242946     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H13	EPDR1
miRBase Accession/Entrez ID	MIMAT0014700	54749
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	EPDR//MERP-1//MERP1//UCC1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	EPDR1	chr7:37881365(+) A-I      intronic chr7:37973708(+) A-I      intronic chr7:37971521(+) A-I      intronic chr7:37884367(+) A-I      intronic chr7:37884295(+) A-I      intronic chr7:37970969(+) A-I      intronic chr7:37988064(+) A-I      intronic chr7:37988058(+) A-I      intronic chr7:37974336(+) A-I      intronic chr7:37985747(+) A-I      intronic chr7:37884213(+) A-I      intronic chr7:37880588(+) A-I      intronic chr7:37970973(+) A-I      intronic chr7:37877153(+) A-I      intronic chr7:37973839(+) A-I      intronic chr7:37973656(+) A-I      intronic chr7:37974491(+) A-I      intronic chr7:37877316(+) A-I      intronic chr7:37974320(+) A-I      intronic chr7:37974381(+) A-I      intronic chr7:37974305(+) A-I      intronic chr7:37974375(+) A-I      intronic chr7:37877217(+) A-I      intronic chr7:37978661(+) A-I      intronic chr7:37978710(+) A-I      intronic chr7:37988020(+) A-I      intronic chr7:37877185(+) A-I      intronic chr7:37971365(+) A-I      intronic chr7:37973653(+) A-I      intronic chr7:37877139(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	EPDR1	chr7:37971365(+) A-G intron -    22484847 chr7:37973653(+) A-G intron -    22484847 chr7:37973656(+) A-G intron -    22484847 chr7:37973683(+) A-G intron -    22484847 chr7:37973839(+) A-G intron -    22484847 chr7:37974305(+) A-G intron -    22484847 chr7:37978661(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	EPDR1	chr7:37780232-37780233(+) m6A intron       24981863 chr7:37780359-37780360(+) m6A intron       24981863 chr7:37780381-37780382(+) m6A intron       24981863 chr7:37960248-37960249(+) m6A 5'UTR//intron       24284625//24209618//24981863 chr7:37960364-37960365(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr7:37960408-37960409(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863 chr7:37960429-37960430(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863 chr7:37960616-37960617(+) m6A CDS//intron       24981863//22575960 chr7:37988629-37988630(+) m6A CDS//intron       24284625//24981863 chr7:37989806-37989807(+) m6A 3'UTR//CDS       24284625//24209618//24981863 chr7:37989854-37989855(+) m6A 3'UTR//CDS       24284625//24209618//24981863//22575960//22608085 chr7:37989867-37989868(+) m6A 3'UTR//CDS       24284625//24209618//24981863//22575960//22608085 chr7:37989921-37989922(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr7:37989984-37989985(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr7:37990067-37990068(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr7:37990210-37990211(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr7:37990232-37990233(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	EPDR1	Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H13
Interactor2: EPDR1

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg