Basic Information:

  VIRBase ID:  

VHID00182908

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H13:  MIMAT0014700          AGO1:  NM_001317122     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H13	AGO1
miRBase Accession/Entrez ID	MIMAT0014700	26523
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	EIF2C//EIF2C1//GERP95//hAgo1//Q99

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	AGO1	chr1:36372264(+) A-I      intronic chr1:36372251(+) A-I      intronic chr1:36372224(+) A-I      intronic chr1:36366811(+) A-I      intronic chr1:36366272(+) A-I      intronic chr1:36366170(+) A-I      intronic chr1:36366109(+) A-I      intronic chr1:36366239(+) A-I      intronic chr1:36377853(+) A-I      intronic chr1:36377730(+) A-I      intronic chr1:36378856(+) A-I      intronic chr1:36378828(+) A-I      intronic chr1:36378455(+) A-I      intronic chr1:36378416(+) A-I      intronic chr1:36377881(+) A-I      intronic chr1:36377866(+) A-I      intronic chr1:36372261(+) A-I      intronic chr1:36371207(+) A-I      intronic chr1:36369417(+) A-I      intronic chr1:36373471(+) A-I      intronic chr1:36366430(+) A-I      intronic chr1:36366413(+) A-I      intronic chr1:36366273(+) A-I      intronic chr1:36369781(+) A-I      intronic chr1:36366119(+) A-I      intronic chr1:36372249(+) A-I      intronic chr1:36366721(+) A-I      intronic chr1:36362064(+) A-I      intronic chr1:36369443(+) A-I      intronic chr1:36374693(+) A-I      intronic chr1:36368789(+) A-I      intronic chr1:36374513(+) A-I      intronic chr1:36372252(+) A-I      intronic chr1:36373487(+) A-I      intronic chr1:36366194(+) A-I      intronic chr1:36369546(+) A-I      intronic chr1:36369505(+) A-I      intronic chr1:36377770(+) A-I      intronic chr1:36366699(+) A-I      intronic chr1:36372171(+) A-I      intronic chr1:36373629(+) A-I      intronic chr1:36369348(+) A-I      intronic chr1:36376520(+) A-I      intronic chr1:36372258(+) A-I      intronic chr1:36372154(+) A-I      intronic chr1:36373462(+) A-I      intronic chr1:36369833(+) A-I      intronic chr1:36372260(+) A-I      intronic chr1:36372163(+) A-I      intronic chr1:36387771(+) A-I      3'UTR chr1:36372256(+) A-I      intronic chr1:36368867(+) A-I      intronic chr1:36366807(+) A-I      intronic chr1:36371233(+) A-I      intronic chr1:36369832(+) A-I      intronic chr1:36369496(+) A-I      intronic chr1:36373520(+) A-I      intronic chr1:36368814(+) A-I      intronic chr1:36372302(+) A-I      intronic chr1:36369311(+) A-I      intronic chr1:36366240(+) A-I      intronic chr1:36377813(+) A-I      intronic chr1:36376411(+) A-I      intronic chr1:36363162(+) A-I      intronic chr1:36371306(+) A-I      intronic chr1:36372184(+) A-I      intronic chr1:36369787(+) A-I      intronic chr1:36357500(+) A-I      intronic chr1:36362195(+) A-I      intronic chr1:36369215(+) A-I      intronic chr1:36361862(+) A-I      intronic chr1:36369457(+) A-I      intronic chr1:36372232(+) A-I      intronic chr1:36374439(+) A-I      intronic chr1:36372245(+) A-I      intronic chr1:36371281(+) A-I      intronic chr1:36363169(+) A-I      intronic chr1:36372298(+) A-I      intronic chr1:36366114(+) A-I      intronic chr1:36368818(+) A-I      intronic chr1:36372288(+) A-I      intronic chr1:36372195(+) A-I      intronic chr1:36366412(+) A-I      intronic chr1:36368668(+) A-I      intronic chr1:36366176(+) A-I      intronic chr1:36369476(+) A-I      intronic chr1:36368887(+) A-I      intronic chr1:36378882(+) A-I      intronic chr1:36372228(+) A-I      intronic chr1:36377806(+) A-I      intronic chr1:36372257(+) A-I      intronic chr1:36372248(+) A-I      intronic chr1:36371334(+) A-I      intronic chr1:36368869(+) A-I      intronic chr1:36369201(+) A-I      intronic chr1:36369310(+) A-I      intronic chr1:36377771(+) A-I      intronic chr1:36376546(+) A-I      intronic chr1:36378894(+) A-I      intronic chr1:36369888(+) A-I      intronic chr1:36369971(+) A-I      intronic chr1:36362095(+) A-I      intronic chr1:36369514(+) A-I      intronic chr1:36376617(+) A-I      intronic chr1:36371252(+) A-I      intronic chr1:36373464(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	AGO1	chr1:36348977-36348978(+) m6A 5'UTR//intron       22575960 chr1:36383952-36383953(+) m6A 3'UTR//CDS       - chr1:36383962-36383963(+) m6A 3'UTR//CDS       - chr1:36385364-36385365(+) m6A 3'UTR       24284625//24209618//24981863 chr1:36385378-36385379(+) m6A 3'UTR       24284625//24209618//24981863 chr1:36385466-36385467(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:36385532-36385533(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:36385577-36385578(+) m6A 3'UTR       24209618//25456834//24981863//22608085 chr1:36385713-36385714(+) m6A 3'UTR       24981863 chr1:36385718-36385719(+) m6A 3'UTR       24981863 chr1:36388589-36388590(+) m6A 3'UTR       27773535 chr1:36389086-36389087(+) m6A 3'UTR       - chr1:36390235-36390236(+) m6A 3'UTR       24981863//27773535 chr1:36390267-36390268(+) m6A 3'UTR       24981863//27773535 chr1:36390292-36390293(+) m6A 3'UTR       24981863//27773535 chr1:36390429-36390430(+) m6A 3'UTR       24981863 chr1:36390478-36390479(+) m6A 3'UTR       24981863 chr1:36390501-36390502(+) m6A 3'UTR       24981863 chr1:36390509-36390510(+) m6A 3'UTR       24981863 chr1:36390519-36390520(+) Tm 3'UTR       - chr1:36394993-36394994(+) m6A 3'UTR       27773535 chr1:36395079-36395080(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	AGO1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HeLa-S3 cells|K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm HeLa-S3 cells|K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H13
Interactor2: AGO1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg