Detail Information

Basic Information:


  VIRBase ID:  

VHID00182883

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H13:           CHD5:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H13 CHD5
miRBase
Accession/Entrez ID		 MIMAT0014700 26038
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - CHD-5

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CHD5
chr1:6197392(-) A-I      intronic
chr1:6197439(-) A-I      intronic
chr1:6197404(-) A-I      intronic
chr1:6197394(-) A-I      intronic
chr1:6187425(-) A-I      intronic
chr1:6180511(-) A-I      intronic
chr1:6180503(-) A-I      intronic
chr1:6180499(-) A-I      intronic
chr1:6173222(-) A-I      intronic
chr1:6187438(-) A-I      intronic
chr1:6180551(-) A-I      intronic
chr1:6187302(-) A-I      intronic
chr1:6187303(-) A-I      intronic
chr1:6187304(-) A-I      intronic
chr1:6187381(-) A-I      intronic
chr1:6180507(-) A-I      intronic
chr1:6198206(-) A-I      intronic
chr1:6197196(-) A-I      intronic
chr1:6180714(-) A-I      intronic
chr1:6180698(-) A-I      intronic
chr1:6183555(-) A-I      intronic
chr1:6180096(-) A-I      intronic
chr1:6183044(-) A-I      intronic
chr1:6173239(-) A-I      intronic
chr1:6197306(-) A-I      intronic
chr1:6180863(-) A-I      intronic
chr1:6199632(-) A-I      intronic
chr1:6183635(-) A-I      intronic
chr1:6173227(-) A-I      intronic
chr1:6178940(-) A-I      intronic
chr1:6179431(-) A-I      intronic
chr1:6179030(-) A-I      intronic
chr1:6178218(-) A-I      intronic
chr1:6199629(-) A-I      intronic
chr1:6179400(-) A-I      intronic
chr1:6174191(-) A-I      intronic
chr1:6178420(-) A-I      intronic
chr1:6178376(-) A-I      intronic
chr1:6201612(-) A-I      intronic
chr1:6178179(-) A-I      intronic
chr1:6180730(-) A-I      intronic
chr1:6178192(-) A-I      intronic
chr1:6198280(-) A-I      intronic
chr1:6201261(-) A-I      intronic
chr1:6180919(-) A-I      intronic
chr1:6183598(-) A-I      intronic
chr1:6201580(-) A-I      intronic
chr1:6180017(-) A-I      intronic
chr1:6179954(-) A-I      intronic
chr1:6183700(-) A-I      intronic
chr1:6173336(-) A-I      intronic
chr1:6200932(-) A-I      intronic
chr1:6183008(-) A-I      intronic
chr1:6200842(-) A-I      intronic
chr1:6178378(-) A-I      intronic
chr1:6198398(-) A-I      intronic
chr1:6173362(-) A-I      intronic
chr1:6207619(-) A-I      intronic
chr1:6193687(-) A-I      intronic
chr1:6178316(-) A-I      intronic
chr1:6178338(-) A-I      intronic
chr1:6182938(-) A-I      intronic
chr1:6183519(-) A-I      intronic
chr1:6182873(-) A-I      intronic
chr1:6197679(-) A-I      intronic
chr1:6197265(-) A-I      intronic
chr1:6198354(-) A-I      intronic
chr1:6237620(-) A-I      intronic
chr1:6178934(-) A-I      intronic
chr1:6198218(-) A-I      intronic
chr1:6179031(-) A-I      intronic
chr1:6183681(-) A-I      intronic
chr1:6173238(-) A-I      intronic
chr1:6183625(-) A-I      intronic
chr1:6197592(-) A-I      intronic
chr1:6197601(-) A-I      intronic
chr1:6183064(-) A-I      intronic
chr1:6180194(-) A-I      intronic
chr1:6173481(-) A-I      intronic
chr1:6197639(-) A-I      intronic
chr1:6178288(-) A-I      intronic
chr1:6183747(-) A-I      intronic
chr1:6201172(-) A-I      intronic
chr1:6178935(-) A-I      intronic
chr1:6180881(-) A-I      intronic
chr1:6180200(-) A-I      intronic
chr1:6179022(-) A-I      intronic
chr1:6180098(-) A-I      intronic
chr1:6201519(-) A-I      intronic
chr1:6179044(-) A-I      intronic
chr1:6180099(-) A-I      intronic
chr1:6180696(-) A-I      intronic
chr1:6197349(-) A-I      intronic
chr1:6180167(-) A-I      intronic
chr1:6197428(-) A-I      intronic
chr1:6178300(-) A-I      intronic
chr1:6179297(-) A-I      intronic
chr1:6201280(-) A-I      intronic
chr1:6179395(-) A-I      intronic
chr1:6179343(-) A-I      intronic
chr1:6197610(-) A-I      intronic
chr1:6183070(-) A-I      intronic
chr1:6180085(-) A-I      intronic
chr1:6180114(-) A-I      intronic
chr1:6180880(-) A-I      intronic
chr1:6180750(-) A-I      intronic
chr1:6201593(-) A-I      intronic
chr1:6180032(-) A-I      intronic
chr1:6180929(-) A-I      intronic
chr1:6174123(-) A-I      intronic
chr1:6201527(-) A-I      intronic
chr1:6199534(-) A-I      intronic
chr1:6178355(-) A-I      intronic
chr1:6180512(-) A-I      intronic
chr1:6197433(-) A-I      intronic
chr1:6198225(-) A-I      intronic
chr1:6173310(-) A-I      intronic
chr1:6197360(-) A-I      intronic
chr1:6180059(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CHD5
chr1:6162596-6162597(-) m6A 3'UTR       -
chr1:6162663-6162664(-) m6A 3'UTR       -
chr1:6164896-6164897(-) m6A 3'UTR       -
chr1:6164938-6164939(-) m6A 3'UTR       24209618
chr1:6165052-6165053(-) m6A 3'UTR       24209618//25456834
chr1:6165072-6165073(-) m6A 3'UTR       24209618//25456834
chr1:6165102-6165103(-) m6A 3'UTR       25456834
chr1:6165140-6165141(-) m6A 3'UTR       25456834
chr1:6165185-6165186(-) m6A 3'UTR       -
chr1:6165191-6165192(-) m6A 3'UTR       -
chr1:6172301-6172302(-) m6A 3'UTR//CDS       24209618
chr1:6172978-6172979(-) m6A 3'UTR//CDS       24209618
chr1:6172988-6172989(-) m6A 3'UTR//CDS       24209618
chr1:6173024-6173025(-) m6A 3'UTR//CDS       24209618
chr1:6173373-6173374(-) m6A CDS//intron       24209618
chr1:6181259-6181260(-) m6A 3'UTR//CDS       -
chr1:6181593-6181594(-) m6A 3'UTR//CDS       -
chr1:6214734-6214735(-) m6A CDS       -
chr1:6214937-6214938(-) m6A CDS       -
chr1:6215724-6215725(-) m6A CDS       -
chr1:6219468-6219469(-) m6A CDS       24209618
chr1:6219476-6219477(-) m6A CDS       24209618

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CHD5
Exosome Blood     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H13
Interactor2: CHD5

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Targetscan
Support Database RepTar//VmiReg

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