Basic Information:

  VIRBase ID:  

VHID00182753

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H13:  MIMAT0014700          SCFD1:  NM_001283032     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H13	SCFD1
miRBase Accession/Entrez ID	MIMAT0014700	23256
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C14orf163//RA410//SLY1//SLY1P//STXBP1L2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SCFD1	chr14:31150312(+) A-I      intronic chr14:31117927(+) A-I      intronic chr14:31161205(+) A-I      intronic chr14:31178588(+) A-I      intronic chr14:31147231(+) A-I      intronic chr14:31111420(+) A-I      intronic chr14:31123868(+) A-I      intronic chr14:31147229(+) A-I      intronic chr14:31174791(+) A-I      intronic chr14:31123801(+) A-I      intronic chr14:31173484(+) A-I      intronic chr14:31163726(+) A-I      intronic chr14:31161211(+) A-I      intronic chr14:31149880(+) A-I      intronic chr14:31193706(+) A-I      intronic chr14:31163699(+) A-I      intronic chr14:31163653(+) A-I      intronic chr14:31161212(+) A-I      intronic chr14:31147320(+) A-I      intronic chr14:31147287(+) A-I      intronic chr14:31112120(+) A-I      intronic chr14:31147146(+) A-I      intronic chr14:31147145(+) A-I      intronic chr14:31147101(+) A-I      intronic chr14:31127851(+) A-I      intronic chr14:31111499(+) A-I      intronic chr14:31111433(+) A-I      intronic chr14:31101186(+) A-I      intronic chr14:31101179(+) A-I      intronic chr14:31098973(+) A-I      intronic chr14:31149901(+) A-I      intronic chr14:31098972(+) A-I      intronic chr14:31098967(+) A-I      intronic chr14:31098950(+) A-I      intronic chr14:31098936(+) A-I      intronic chr14:31098853(+) A-I      intronic chr14:31098848(+) A-I      intronic chr14:31098835(+) A-I      intronic chr14:31153481(+) A-I      intronic chr14:31146496(+) A-I      intronic chr14:31123760(+) A-I      intronic chr14:31125114(+) A-I      intronic chr14:31123766(+) A-I      intronic chr14:31123805(+) A-I      intronic chr14:31173406(+) A-I      intronic chr14:31096791(+) A-I      intronic chr14:31202691(+) A-I      intronic chr14:31202579(+) A-I      intronic chr14:31184787(+) A-I      intronic chr14:31123733(+) A-I      intronic chr14:31163769(+) A-I      intronic chr14:31123622(+) A-I      intronic chr14:31184656(+) A-I      intronic chr14:31101134(+) A-I      intronic chr14:31169759(+) A-I      intronic chr14:31163741(+) A-I      intronic chr14:31150372(+) A-I      intronic chr14:31163806(+) A-I      intronic chr14:31163826(+) A-I      intronic chr14:31150177(+) A-I      intronic chr14:31163696(+) A-I      intronic chr14:31101133(+) A-I      intronic chr14:31147211(+) A-I      intronic chr14:31174727(+) A-I      intronic chr14:31173405(+) A-I      intronic chr14:31173513(+) A-I      intronic chr14:31143808(+) A-I      intronic chr14:31202682(+) A-I      intronic chr14:31195164(+) A-I      intronic chr14:31195160(+) A-I      intronic chr14:31147235(+) A-I      intronic chr14:31173451(+) A-I      intronic chr14:31163676(+) A-I      intronic chr14:31202772(+) A-I      intronic chr14:31184626(+) A-I      intronic chr14:31147216(+) A-I      intronic chr14:31118011(+) A-I      intronic chr14:31163737(+) A-I      intronic chr14:31184599(+) A-I      intronic chr14:31202802(+) A-I      intronic chr14:31125072(+) A-I      intronic chr14:31163757(+) A-I      intronic chr14:31127782(+) A-I      intronic chr14:31096782(+) A-I      intronic chr14:31163818(+) A-I      intronic chr14:31150280(+) A-I      intronic chr14:31111394(+) A-I      intronic chr14:31143834(+) A-I      intronic chr14:31178648(+) A-I      intronic chr14:31163617(+) A-I      intronic chr14:31184679(+) A-I      intronic chr14:31178686(+) A-I      intronic chr14:31149857(+) A-I      intronic chr14:31163623(+) A-I      intronic chr14:31174722(+) A-I      intronic chr14:31180673(+) A-I      intronic chr14:31111349(+) A-I      intronic chr14:31117876(+) A-I      intronic chr14:31147175(+) A-I      intronic chr14:31127657(+) A-I      intronic chr14:31180542(+) A-I      intronic chr14:31112144(+) A-I      intronic chr14:31153469(+) A-I      intronic chr14:31153452(+) A-I      intronic chr14:31194261(+) A-I      intronic chr14:31153405(+) A-I      intronic chr14:31163624(+) A-I      intronic chr14:31123800(+) A-I      intronic chr14:31163831(+) A-I      intronic chr14:31096894(+) A-I      intronic chr14:31163773(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SCFD1	chr14:31163617(+) A-G intron -    22484847 chr14:31163696(+) A-G intron -    22484847 chr14:31163741(+) A-G intron -    22484847 chr14:31163757(+) A-G intron -    22484847 chr14:31163818(+) A-G intron -    22484847 chr14:31184774(+) C-A intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SCFD1	chr14:31091601-31091602(+) m6A 5'UTR//CDS       24981863 chr14:31097459-31097460(+) m6A CDS//exon//intron       24209618 chr14:31097472-31097473(+) m6A CDS//exon//intron       24209618 chr14:31107395-31107396(+) m6A 3'UTR//5'UTR//CDS//intron       27773535 chr14:31112545-31112546(+) m6A 3'UTR//CDS//exon       27773535 chr14:31112559-31112560(+) m6A 3'UTR//CDS//exon       27773535 chr14:31112569-31112570(+) m6A 3'UTR//CDS//exon       27773535 chr14:31118765-31118766(+) m6A 3'UTR//CDS//exon       27773535 chr14:31119772-31119773(+) m6A 3'UTR//CDS//exon       27773535 chr14:31119777-31119778(+) m6A 3'UTR//CDS//exon       27773535 chr14:31119784-31119785(+) m6A 3'UTR//CDS//exon       27773535 chr14:31119813-31119814(+) m6A 3'UTR//CDS//exon       27773535 chr14:31122729-31122730(+) m6A 3'UTR//CDS//exon       27773535 chr14:31139474-31139475(+) m6A 3'UTR//CDS//exon       27773535 chr14:31139510-31139511(+) m6A 3'UTR//CDS//exon       27773535 chr14:31139529-31139530(+) m6A 3'UTR//CDS//exon       27773535 chr14:31139543-31139544(+) m6A 3'UTR//CDS//exon       27773535 chr14:31139589-31139590(+) m6A 3'UTR//CDS//exon       27773535 chr14:31142498-31142499(+) m6A 3'UTR//CDS//exon       27773535 chr14:31143131-31143132(+) m6A 3'UTR//CDS//exon       27773535 chr14:31144201-31144202(+) m6A 3'UTR//CDS//exon       27773535 chr14:31144219-31144220(+) m6A 3'UTR//CDS//exon       27773535 chr14:31144261-31144262(+) m6A 3'UTR//CDS//exon       27773535 chr14:31185154-31185155(+) m6A 3'UTR//CDS//exon       27773535 chr14:31185178-31185179(+) m6A 3'UTR//CDS//exon       27773535 chr14:31188533-31188534(+) m6A 3'UTR//CDS//exon       27773535 chr14:31190915-31190916(+) m6A exon//intron       27773535 chr14:31190950-31190951(+) m6A exon//intron       27773535 chr14:31191817-31191818(+) m6A exon//intron       27773535 chr14:31204000-31204001(+) m6A 3'UTR//CDS//exon       27773535 chr14:31204009-31204010(+) m6A 3'UTR//CDS//exon       27773535 chr14:31204037-31204038(+) Y 3'UTR//CDS//exon       26075521 chr14:31204060-31204061(+) m6A 3'UTR//CDS//exon       27773535 chr14:31204805-31204806(+) m6A 3'UTR//CDS//exon       27773535 chr14:31204824-31204825(+) m6A 3'UTR//exon       27773535 chr14:31204988-31204989(+) m6A 3'UTR//exon       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SCFD1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|HeLa-S3 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H13
Interactor2: SCFD1

Evidence Support:

Prediction-Evidence	cRep//miRanda
Support Database	RepTar//VmiReg