Basic Information:

  VIRBase ID:  

VHID00182622

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H13:  MIMAT0014700          POLI:  NR_147257     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H13	POLI
miRBase Accession/Entrez ID	MIMAT0014700	11201
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	eta2//RAD30B//RAD3OB

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	POLI	chr18:51812353(+) A-I      intronic chr18:51813220(+) A-I      intronic chr18:51813118(+) A-I      intronic chr18:51813094(+) A-I      intronic chr18:51812299(+) A-I      intronic chr18:51812398(+) A-I      intronic chr18:51813064(+) A-I      intronic chr18:51822137(+) A-I      3'UTR chr18:51813104(+) A-I      intronic chr18:51801556(+) A-I      intronic chr18:51812468(+) A-I      intronic chr18:51812469(+) A-I      intronic chr18:51813155(+) A-I      intronic chr18:51804576(+) A-I      intronic chr18:51804607(+) A-I      intronic chr18:51812264(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	POLI	chr18:51796757(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	POLI	chr18:51795869-51795870(+) m6A 5'UTR       25456834 chr18:51795996-51795997(+) m6A 5'UTR//CDS//exon       24209618//25456834//24981863 chr18:51820028-51820029(+) m6A 3'UTR//CDS//exon//intron       24981863//22608085 chr18:51820055-51820056(+) m6A 3'UTR//CDS//exon//intron       24981863//22608085 chr18:51820063-51820064(+) m6A 3'UTR//CDS//exon//intron       24981863//22608085 chr18:51820108-51820109(+) m6A 3'UTR//CDS//exon//intron       24284625//24981863//22608085 chr18:51820154-51820155(+) m6A 3'UTR//CDS//exon//intron       24284625//24981863//22608085 chr18:51820389-51820390(+) m6A 3'UTR//CDS//intron       22608085 chr18:51820416-51820417(+) m6A 3'UTR//CDS//intron       22608085 chr18:51820423-51820424(+) m6A 3'UTR//CDS//intron       22608085 chr18:51820524-51820525(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr18:51820533-51820534(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr18:51820562-51820563(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr18:51820595-51820596(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr18:51820625-51820626(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr18:51820651-51820652(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr18:51820664-51820665(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr18:51820677-51820678(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr18:51820758-51820759(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr18:51820782-51820783(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr18:51820827-51820828(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr18:51820918-51820919(+) m6A 3'UTR//intron       24209618//24981863//27773535//22608085 chr18:51820947-51820948(+) m6A 3'UTR//intron       24981863//27773535//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	POLI	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H13
Interactor2: POLI

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg