Basic Information:

  VIRBase ID:  

VHID00182458

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H13:  MIMAT0014700          PIGK:  NM_005482     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H13	PIGK
miRBase Accession/Entrez ID	MIMAT0014700	10026
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	GPI8//NEDHCAS

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PIGK	chr1:77602047(-) A-I      intronic chr1:77672805(-) A-I      intronic chr1:77564090(-) A-I      intronic chr1:77603562(-) A-I      intronic chr1:77605777(-) A-I      intronic chr1:77603545(-) A-I      intronic chr1:77662486(-) A-I      intronic chr1:77672826(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PIGK	chr1:77662486(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PIGK	chr1:77556403-77556404(-) m6A 3'UTR       27773535 chr1:77556424-77556425(-) m6A 3'UTR       27773535 chr1:77556440-77556441(-) m6A 3'UTR       27773535 chr1:77557942-77557943(-) m6A 3'UTR       24981863 chr1:77558020-77558021(-) m6A 3'UTR       24981863 chr1:77558027-77558028(-) m6A 3'UTR       24981863 chr1:77558057-77558058(-) m6A 3'UTR       24981863 chr1:77558093-77558094(-) m6A 3'UTR//CDS       24981863 chr1:77676162-77676163(-) m6A CDS//exon//intron       24284625//24981863 chr1:77685088-77685089(-) m6A 5'UTR//exon       24284625//24981863//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PIGK	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H13
Interactor2: PIGK

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg