Basic Information:

  VIRBase ID:  

VHID00181052

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H12:  MIMAT0014699          TTC26:  NM_001144923     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H12	TTC26
miRBase Accession/Entrez ID	MIMAT0014699	79989
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	dyf-13//DYF13//IFT56

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TTC26	chr7:138874118(+) A-I      Syn:Gln->Gln chr7:138858522(+) A-I      intronic chr7:138858500(+) A-I      intronic chr7:138821219(+) A-I      intronic chr7:138821227(+) A-I      intronic chr7:138858537(+) A-I      intronic chr7:138858555(+) A-I      intronic chr7:138858556(+) A-I      intronic chr7:138854637(+) A-I      intronic chr7:138845240(+) A-I      intronic chr7:138875278(+) A-I      3'UTR chr7:138875252(+) A-I      3'UTR chr7:138875253(+) A-I      3'UTR chr7:138875265(+) A-I      3'UTR chr7:138843498(+) A-I      intronic chr7:138854689(+) A-I      intronic chr7:138859724(+) A-I      intronic chr7:138861798(+) A-I      intronic chr7:138842329(+) A-I      intronic chr7:138861833(+) A-I      intronic chr7:138859511(+) A-I      intronic chr7:138837073(+) A-I      intronic chr7:138875243(+) A-I      3'UTR chr7:138875167(+) A-I      3'UTR chr7:138836593(+) A-I      intronic chr7:138861732(+) A-I      intronic chr7:138860839(+) A-I      intronic chr7:138827431(+) A-I      intronic chr7:138833796(+) A-I      intronic chr7:138821354(+) A-I      intronic chr7:138859512(+) A-I      intronic chr7:138859772(+) A-I      intronic chr7:138860848(+) A-I      intronic chr7:138821247(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TTC26	chr7:138858862(+) A-I intron -    22327324 chr7:138858864(+) A-I intron -    22327324 chr7:138836593(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TTC26	chr7:138818521-138818522(+) m6A 5'UTR//exon       24981863//22608085 chr7:138818582-138818583(+) m6A 5'UTR//exon       24981863//22608085 chr7:138818591-138818592(+) m6A 5'UTR//exon       24981863//22608085 chr7:138819417-138819418(+) m6A CDS//exon       24981863 chr7:138819483-138819484(+) m6A CDS//exon//intron       24981863 chr7:138874161-138874162(+) m6A 3'UTR//CDS       22608085 chr7:138874199-138874200(+) m6A 3'UTR       22608085 chr7:138874222-138874223(+) m6A 3'UTR       24209618//24981863//22608085 chr7:138874316-138874317(+) m6A 3'UTR       24284625//24981863//22608085 chr7:138874330-138874331(+) m6A 3'UTR       24284625//24981863//22608085 chr7:138874348-138874349(+) m6A 3'UTR       24284625//24981863//22608085 chr7:138874402-138874403(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr7:138874470-138874471(+) m6A 3'UTR       24981863//22608085 chr7:138874528-138874529(+) m6A 3'UTR       24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TTC26	Exosome Blood     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H12
Interactor2: TTC26

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg