Detail Information

Basic Information:


  VIRBase ID:  

VHID00179923

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H11-3p:           RTN4IP1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H11-3p RTN4IP1
miRBase
Accession/Entrez ID		 MIMAT0014698 84816
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - NIMP//OPA10

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RTN4IP1
chr6:107072380(-) A-I      intronic
chr6:107076230(-) A-I      intronic
chr6:107076257(-) A-I      intronic
chr6:107025058(-) A-I      intronic
chr6:107045356(-) A-I      intronic
chr6:107057238(-) A-I      intronic
chr6:107057273(-) A-I      intronic
chr6:107057360(-) A-I      intronic
chr6:107057368(-) A-I      intronic
chr6:107057373(-) A-I      intronic
chr6:107057397(-) A-I      intronic
chr6:107063967(-) A-I      intronic
chr6:107063970(-) A-I      intronic
chr6:107072356(-) A-I      intronic
chr6:107072357(-) A-I      intronic
chr6:107072348(-) A-I      intronic
chr6:107045383(-) A-I      intronic
chr6:107053161(-) A-I      intronic
chr6:107053165(-) A-I      intronic
chr6:107025059(-) A-I      intronic
chr6:107053218(-) A-I      intronic
chr6:107064087(-) A-I      intronic
chr6:107019465(-) A-I      3'UTR
chr6:107043599(-) A-I      intronic
chr6:107044343(-) A-I      intronic
chr6:107040722(-) A-I      intronic
chr6:107042180(-) A-I      intronic
chr6:107044347(-) A-I      intronic
chr6:107072483(-) A-I      intronic
chr6:107064064(-) A-I      intronic
chr6:107044375(-) A-I      intronic
chr6:107054525(-) A-I      intronic
chr6:107033138(-) A-I      intronic
chr6:107019452(-) A-I      3'UTR
chr6:107019371(-) A-I      3'UTR
chr6:107019318(-) A-I      3'UTR
chr6:107019560(-) A-I      3'UTR
chr6:107019434(-) A-I      3'UTR
chr6:107019466(-) A-I      3'UTR
chr6:107019458(-) A-I      3'UTR
chr6:107040721(-) A-I      intronic
chr6:107075695(-) A-I      intronic
chr6:107063922(-) A-I      intronic
chr6:107049624(-) A-I      intronic
chr6:107060150(-) A-I      intronic
chr6:107044292(-) A-I      intronic
chr6:107063958(-) A-I      intronic
chr6:107042815(-) A-I      intronic
chr6:107058034(-) A-I      intronic
chr6:107072201(-) A-I      intronic
chr6:107044406(-) A-I      intronic
chr6:107053499(-) A-I      intronic
chr6:107072566(-) A-I      intronic
chr6:107057212(-) A-I      intronic
chr6:107057398(-) A-I      intronic
chr6:107044456(-) A-I      intronic
chr6:107060140(-) A-I      intronic
chr6:107057289(-) A-I      intronic
chr6:107045438(-) A-I      intronic
chr6:107044337(-) A-I      intronic
chr6:107053054(-) A-I      intronic
chr6:107033132(-) A-I      intronic
chr6:107060178(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RTN4IP1
chr6:107019447(-) T-C exon 3'UTR    22484847
chr6:107022318(-) G-T intron -    22484847
chr6:107025322(-) G-T intron -    22484847
chr6:107033132(-) A-G intron -    22484847
chr6:107033138(-) A-G intron -    22484847
chr6:107042752(-) A-G intron -    22484847
chr6:107042815(-) A-G intron -    22484847
chr6:107043599(-) A-G intron -    22484847
chr6:107057212(-) A-G intron -    22484847
chr6:107057404(-) A-G intron -    22484847
chr6:107060178(-) A-G intron -    22484847
chr6:107063958(-) A-G intron -    22484847
chr6:107072483(-) A-G intron -    22484847
chr6:107072566(-) A-G intron -    22484847
chr6:107076260(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RTN4IP1
chr6:107076711-107076712(-) m6A CDS       24981863
chr6:107076880-107076881(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr6:107076997-107076998(-) m6A 5'UTR       24284625//24981863//27773535//22608085
chr6:107077133-107077134(-) m6A 5'UTR       24284625//24209618//25456834//24981863//22608085
chr6:107077233-107077234(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RTN4IP1
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H11-3p
Interactor2: RTN4IP1

Evidence Support:


Prediction-Evidence cRep//miRanda
Support Database RepTar//VmiReg

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