Detail Information

Basic Information:


  VIRBase ID:  

VHID00179138

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H11-3p:           BRD8:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H11-3p BRD8
miRBase
Accession/Entrez ID		 MIMAT0014698 10902
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - p120//SMAP//SMAP2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR BRD8
chr5:137498080(-) A-I      intronic
chr5:137512255(-) A-I      intronic
chr5:137491016(-) A-I      intronic
chr5:137497992(-) A-I      intronic
chr5:137490604(-) A-I      intronic
chr5:137484961(-) A-I      intronic
chr5:137483453(-) A-I      intronic
chr5:137509612(-) A-I      intronic
chr5:137497989(-) A-I      intronic
chr5:137509547(-) A-I      intronic
chr5:137509330(-) A-I      intronic
chr5:137508921(-) A-I      intronic
chr5:137508895(-) A-I      intronic
chr5:137498351(-) A-I      intronic
chr5:137498116(-) A-I      intronic
chr5:137509639(-) A-I      intronic
chr5:137510101(-) A-I      intronic
chr5:137510671(-) A-I      intronic
chr5:137512176(-) A-I      intronic
chr5:137512206(-) A-I      intronic
chr5:137491038(-) A-I      intronic
chr5:137509355(-) A-I      intronic
chr5:137498048(-) A-I      intronic
chr5:137498360(-) A-I      intronic
chr5:137491967(-) A-I      intronic
chr5:137508055(-) A-I      intronic
chr5:137498285(-) A-I      intronic
chr5:137509549(-) A-I      intronic
chr5:137508100(-) A-I      intronic
chr5:137498064(-) A-I      intronic
chr5:137491934(-) A-I      intronic
chr5:137482183(-) A-I      intronic
chr5:137497959(-) A-I      intronic
chr5:137509568(-) A-I      intronic
chr5:137498354(-) A-I      intronic
chr5:137509004(-) A-I      intronic
chr5:137509386(-) A-I      intronic
chr5:137508963(-) A-I      intronic
chr5:137508975(-) A-I      intronic
chr5:137498643(-) A-I      intronic
chr5:137497926(-) A-I      intronic
chr5:137497963(-) A-I      intronic
chr5:137497951(-) A-I      intronic
chr5:137511172(-) A-I      intronic
chr5:137502769(-) A-I      intronic
chr5:137512039(-) A-I      intronic
chr5:137498309(-) A-I      intronic
chr5:137498503(-) A-I      intronic
chr5:137489581(-) A-I      intronic
chr5:137498174(-) A-I      intronic
chr5:137510675(-) A-I      intronic
chr5:137510161(-) A-I      intronic
chr5:137498112(-) A-I      intronic
chr5:137498279(-) A-I      intronic
chr5:137490770(-) A-I      intronic
chr5:137498022(-) A-I      intronic
chr5:137498313(-) A-I      intronic
chr5:137509430(-) A-I      intronic
chr5:137484569(-) A-I      intronic
chr5:137511282(-) A-I      intronic
chr5:137497012(-) A-I      intronic
chr5:137490970(-) A-I      intronic
chr5:137511491(-) A-I      intronic
chr5:137484135(-) A-I      intronic
chr5:137509510(-) A-I      intronic
chr5:137507955(-) A-I      intronic
chr5:137509647(-) A-I      intronic
chr5:137510039(-) A-I      intronic
chr5:137498135(-) A-I      intronic
chr5:137510845(-) A-I      intronic
chr5:137484111(-) A-I      intronic
chr5:137510202(-) A-I      intronic
chr5:137510717(-) A-I      intronic
chr5:137512187(-) A-I      intronic
chr5:137490723(-) A-I      intronic
chr5:137498312(-) A-I      intronic
chr5:137509590(-) A-I      intronic
chr5:137490973(-) A-I      intronic
chr5:137502772(-) A-I      intronic
chr5:137511163(-) A-I      intronic
chr5:137498361(-) A-I      intronic
chr5:137510636(-) A-I      intronic
chr5:137498062(-) A-I      intronic
chr5:137498590(-) A-I      intronic
chr5:137498347(-) A-I      intronic
chr5:137510238(-) A-I      intronic
chr5:137498088(-) A-I      intronic
chr5:137484957(-) A-I      intronic
chr5:137498595(-) A-I      intronic
chr5:137511156(-) A-I      intronic
chr5:137509633(-) A-I      intronic
chr5:137498164(-) A-I      intronic
chr5:137498073(-) A-I      intronic
chr5:137498568(-) A-I      intronic
chr5:137510690(-) A-I      intronic
chr5:137508068(-) A-I      intronic
chr5:137489573(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED BRD8
chr5:137507955(-) A-I intron -    15545495
chr5:137508055(-) A-I intron -    15545495
chr5:137508068(-) A-I intron -    15545495
chr5:137508088(-) A-I intron -    15545495
chr5:137508100(-) A-I intron -    15545495
chr5:137497951(-) A-G intron -    22484847
chr5:137498073(-) A-G intron -    22484847
chr5:137498164(-) A-G intron -    22484847
chr5:137498174(-) A-G intron -    22484847
chr5:137509004(-) A-G intron -    22484847
chr5:137509510(-) A-G intron -    22484847
chr5:137509512(-) A-G intron -    22484847
chr5:137509633(-) A-G intron -    22484847
chr5:137509641(-) A-G intron -    22484847
chr5:137509645(-) A-G intron -    22484847
chr5:137510039(-) A-G intron -    22484847
chr5:137510202(-) A-G intron -    22484847
chr5:137511491(-) A-G intron -    22484847
chr5:137512187(-) A-G intron -    22484847
chr5:137512222(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase BRD8
chr5:137492867-137492868(-) m6A 3'UTR//intron       24981863
chr5:137492946-137492947(-) m6A 3'UTR//CDS//intron       24981863//27773535
chr5:137493333-137493334(-) m6A 3'UTR//intron       24981863//27773535
chr5:137493345-137493346(-) m6A 3'UTR//intron       27773535
chr5:137493389-137493390(-) m6A 3'UTR//intron       27773535
chr5:137493413-137493414(-) m6A 3'UTR//intron       27773535
chr5:137498922-137498923(-) m6A 3'UTR//CDS//intron       24981863//27773535//27371828
chr5:137499798-137499799(-) m6A 3'UTR//CDS//intron       27773535//27371828
chr5:137500032-137500033(-) m6A 3'UTR//CDS//exon       27773535//27371828
chr5:137500407-137500408(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr5:137500428-137500429(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr5:137500492-137500493(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:137500505-137500506(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:137500519-137500520(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:137500591-137500592(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr5:137500600-137500601(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr5:137500634-137500635(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr5:137500642-137500643(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr5:137500658-137500659(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr5:137500676-137500677(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr5:137500681-137500682(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr5:137500730-137500731(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr5:137501520-137501521(-) m6A 3'UTR//CDS//exon       24284625//27371828
chr5:137501541-137501542(-) m6A 3'UTR//CDS//exon       24284625//27371828
chr5:137501631-137501632(-) Tm 3'UTR//CDS//exon       -
chr5:137502318-137502319(-) m6A 3'UTR//CDS//exon//intron       27773535
chr5:137504239-137504240(-) m6A CDS//intron       27773535
chr5:137504364-137504365(-) m6A CDS//intron       27773535
chr5:137505070-137505071(-) m6A exon//intron       27773535//27371828
chr5:137506422-137506423(-) m6A exon//intron       24981863//27773535//27371828
chr5:137506549-137506550(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr5:137506556-137506557(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr5:137506564-137506565(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr5:137506579-137506580(-) m6A 3'UTR//CDS//exon       24981863//27773535//22575960
chr5:137506742-137506743(-) m6A 3'UTR//CDS//exon       24981863//27773535//22575960
chr5:137506764-137506765(-) m6A 3'UTR//CDS//exon       24981863
chr5:137506814-137506815(-) m6A 3'UTR//CDS//exon       24981863
chr5:137507786-137507787(-) m6A 3'UTR//CDS//exon//intron       27773536
chr5:137508421-137508422(-) m6A 3'UTR//CDS//intron       27773536
chr5:137514316-137514317(-) m6A 5'UTR//exon       24981863
chr5:137514339-137514340(-) m6A 5'UTR       24981863
chr5:137514390-137514391(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate BRD8
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H11-3p
Interactor2: BRD8

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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