Detail Information

Basic Information:


  VIRBase ID:  

VHID00178419

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H11-3p:           ERCC1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H11-3p ERCC1
miRBase
Accession/Entrez ID		 MIMAT0014698 2067
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - COFS4//RAD10//UV20

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ERCC1
chr19:45914952(-) A-I      intronic
chr19:45913617(-) A-I      intronic
chr19:45913637(-) A-I      intronic
chr19:45914249(-) A-I      intronic
chr19:45913823(-) A-I      intronic
chr19:45914259(-) A-I      intronic
chr19:45914261(-) A-I      intronic
chr19:45914301(-) A-I      intronic
chr19:45914309(-) A-I      intronic
chr19:45914928(-) A-I      intronic
chr19:45913618(-) A-I      intronic
chr19:45914264(-) A-I      intronic
chr19:45913621(-) A-I      intronic
chr19:45913613(-) A-I      intronic
chr19:45915483(-) A-I      intronic
chr19:45924845(-) A-I      intronic
chr19:45915689(-) A-I      intronic
chr19:45921020(-) A-I      intronic
chr19:45921026(-) A-I      intronic
chr19:45921030(-) A-I      intronic
chr19:45924964(-) A-I      intronic
chr19:45921054(-) A-I      intronic
chr19:45921483(-) A-I      intronic
chr19:45921511(-) A-I      intronic
chr19:45921739(-) A-I      intronic
chr19:45924803(-) A-I      intronic
chr19:45913502(-) A-I      intronic
chr19:45913570(-) A-I      intronic
chr19:45915008(-) A-I      intronic
chr19:45915200(-) A-I      intronic
chr19:45914886(-) A-I      intronic
chr19:45915320(-) A-I      intronic
chr19:45925085(-) A-I      intronic
chr19:45924968(-) A-I      intronic
chr19:45914319(-) A-I      intronic
chr19:45914190(-) A-I      intronic
chr19:45915259(-) A-I      intronic
chr19:45914150(-) A-I      intronic
chr19:45914139(-) A-I      intronic
chr19:45914115(-) A-I      intronic
chr19:45913713(-) A-I      intronic
chr19:45913687(-) A-I      intronic
chr19:45914930(-) A-I      intronic
chr19:45915253(-) A-I      intronic
chr19:45925932(-) A-I      intronic
chr19:45920293(-) A-I      intronic
chr19:45921096(-) A-I      intronic
chr19:45915706(-) A-I      intronic
chr19:45924898(-) A-I      intronic
chr19:45916579(-) A-I      intronic
chr19:45915659(-) A-I      intronic
chr19:45914908(-) A-I      intronic
chr19:45925933(-) A-I      intronic
chr19:45921086(-) A-I      intronic
chr19:45914149(-) A-I      intronic
chr19:45914822(-) A-I      intronic
chr19:45925813(-) A-I      intronic
chr19:45914889(-) A-I      intronic
chr19:45914807(-) A-I      intronic
chr19:45915587(-) A-I      intronic
chr19:45925767(-) A-I      intronic
chr19:45916231(-) A-I      intronic
chr19:45915514(-) A-I      intronic
chr19:45921149(-) A-I      intronic
chr19:45921177(-) A-I      intronic
chr19:45921423(-) A-I      intronic
chr19:45921495(-) A-I      intronic
chr19:45922042(-) A-I      intronic
chr19:45916732(-) A-I      3'UTR
chr19:45921082(-) A-I      intronic
chr19:45925170(-) A-I      intronic
chr19:45914219(-) A-I      intronic
chr19:45914904(-) A-I      intronic
chr19:45921569(-) A-I      intronic
chr19:45915323(-) A-I      intronic
chr19:45921998(-) A-I      intronic
chr19:45921497(-) A-I      intronic
chr19:45914306(-) A-I      intronic
chr19:45921498(-) A-I      intronic
chr19:45919176(-) A-I      intronic
chr19:45921775(-) A-I      intronic
chr19:45915545(-) A-I      intronic
chr19:45921098(-) A-I      intronic
chr19:45925786(-) A-I      intronic
chr19:45915175(-) A-I      intronic
chr19:45920260(-) A-I      intronic
chr19:45915599(-) A-I      intronic
chr19:45924782(-) A-I      intronic
chr19:45914220(-) A-I      intronic
chr19:45916136(-) A-I      intronic
chr19:45914884(-) A-I      intronic
chr19:45915610(-) A-I      intronic
chr19:45915525(-) A-I      intronic
chr19:45914847(-) A-I      intronic
chr19:45921769(-) A-I      intronic
chr19:45921603(-) A-I      intronic
chr19:45916715(-) A-I      3'UTR
chr19:45915390(-) A-I      intronic
chr19:45914134(-) A-I      intronic
chr19:45914250(-) A-I      intronic
chr19:45921999(-) A-I      intronic
chr19:45914349(-) A-I      intronic
chr19:45915384(-) A-I      intronic
chr19:45915312(-) A-I      intronic
chr19:45915150(-) A-I      intronic
chr19:45920341(-) A-I      intronic
chr19:45914940(-) A-I      intronic
chr19:45925155(-) A-I      intronic
chr19:45914826(-) A-I      intronic
chr19:45914969(-) A-I      intronic
chr19:45921560(-) A-I      intronic
chr19:45925844(-) A-I      intronic
chr19:45925866(-) A-I      intronic
chr19:45915389(-) A-I      intronic
chr19:45914830(-) A-I      intronic
chr19:45915013(-) A-I      intronic
chr19:45915684(-) A-I      intronic
chr19:45925084(-) A-I      intronic
chr19:45925013(-) A-I      intronic
chr19:45924989(-) A-I      intronic
chr19:45914354(-) A-I      intronic
chr19:45925860(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ERCC1
chr19:45926642(-) C-A intron -    21725310
chr19:45915684(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ERCC1
chr19:45911351-45911352(-) m6A 3'UTR       -
chr19:45911377-45911378(-) m6A 3'UTR       24284625
chr19:45911470-45911471(-) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085
chr19:45911483-45911484(-) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085
chr19:45911585-45911586(-) m6A 3'UTR       24284625//25456834//24981863//22608085
chr19:45911633-45911634(-) m6A 3'UTR       24284625//25456834//24981863//22608085
chr19:45911670-45911671(-) m6A 3'UTR       24284625//24981863//22608085
chr19:45911961-45911962(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chr19:45912073-45912074(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr19:45912078-45912079(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr19:45912150-45912151(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr19:45912300-45912301(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr19:45912693-45912694(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chr19:45912759-45912760(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr19:45912911-45912912(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr19:45916702-45916703(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr19:45916731-45916732(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27773535//27371828//22608085
chr19:45916749-45916750(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27773535//27371828//22608085
chr19:45916773-45916774(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27773535//27371828//22608085
chr19:45916826-45916827(-) m6A CDS//exon//intron       24284625//25456834//24981863//27773535//22608085
chr19:45916831-45916832(-) m6A CDS//exon//intron       24284625//25456834//24981863//27773535//22608085
chr19:45916838-45916839(-) m6A CDS//exon//intron       24284625//25456834//24981863//27773535//22608085
chr19:45916865-45916866(-) m6A CDS//exon//intron       24284625//25456834//24981863//27773535//22608085
chr19:45916877-45916878(-) m6A CDS//exon//intron       24284625//24981863//27773535//22608085
chr19:45916914-45916915(-) m6A CDS//exon//intron       27773535
chr19:45917248-45917249(-) m6A 3'UTR//CDS//exon//intron       27773536
chr19:45917615-45917616(-) m6A exon//intron       27773536
chr19:45922428-45922429(-) m6A 3'UTR//CDS//exon       27773535
chr19:45926615-45926616(-) m6A CDS//exon       27371828//27773536
chr19:45926627-45926628(-) m6A CDS//exon       27371828//27773536
chr19:45926757-45926758(-) m6A 5'UTR//intron       24981863//27371828//27773536
chr19:45926837-45926838(-) m6A 5'UTR//intron       24981863
chr19:45926845-45926846(-) m6A 5'UTR//intron       24981863
chr19:45927044-45927045(-) m6A 5'UTR//intron       24981863
chr19:45927058-45927059(-) m6A 5'UTR//intron       24981863
chr19:45927087-45927088(-) m6A 5'UTR//exon//intron       24981863
chr19:45927245-45927246(-) m6A 5'UTR//intron       24981863
chr19:45927429-45927430(-) m6A 5'UTR//intron       24981863
chr19:45927463-45927464(-) m6A 5'UTR//intron       24981863
chr19:45927523-45927524(-) m6A 5'UTR//intron       24981863
chr19:45927534-45927535(-) m6A 5'UTR//intron       24981863
chr19:45927578-45927579(-) m6A 5'UTR//intron       24981863
chr19:45927596-45927597(-) m6A 5'UTR//intron       24981863
chr19:45981874-45981875(-) m1A intron       23118484
chr19:45981877-45981878(-) Y intron       23118484
chr19:45981906-45981907(-) i6A intron       23118484
chr19:45981909-45981910(-) xU intron       23118484

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ERCC1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H11-3p
Interactor2: ERCC1

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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