Detail Information

Basic Information:


  VIRBase ID:  

VHID00178230

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H11-5p:           SAMD12:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H11-5p SAMD12
miRBase
Accession/Entrez ID		 MIMAT0014697 401474
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SAMD12
chr8:119310610(-) A-I      intronic
chr8:119569063(-) A-I      intronic
chr8:119569095(-) A-I      intronic
chr8:119310540(-) A-I      intronic
chr8:119310530(-) A-I      intronic
chr8:119489501(-) A-I      intronic
chr8:119310502(-) A-I      intronic
chr8:119310490(-) A-I      intronic
chr8:119247578(-) A-I      intronic
chr8:119310450(-) A-I      intronic
chr8:119247573(-) A-I      intronic
chr8:119246906(-) A-I      intronic
chr8:119489500(-) A-I      intronic
chr8:119487431(-) A-I      intronic
chr8:119487426(-) A-I      intronic
chr8:119310377(-) A-I      intronic
chr8:119310358(-) A-I      intronic
chr8:119487396(-) A-I      intronic
chr8:119487311(-) A-I      intronic
chr8:119246757(-) A-I      intronic
chr8:119246781(-) A-I      intronic
chr8:119360448(-) A-I      intronic
chr8:119360418(-) A-I      intronic
chr8:119246786(-) A-I      intronic
chr8:119310327(-) A-I      intronic
chr8:119246868(-) A-I      intronic
chr8:119442850(-) A-I      intronic
chr8:119246887(-) A-I      intronic
chr8:119313091(-) A-I      intronic
chr8:119310285(-) A-I      intronic
chr8:119308374(-) A-I      intronic
chr8:119288093(-) A-I      intronic
chr8:119310286(-) A-I      intronic
chr8:119442794(-) A-I      intronic
chr8:119442775(-) A-I      intronic
chr8:119369671(-) A-I      intronic
chr8:119442766(-) A-I      intronic
chr8:119288946(-) A-I      intronic
chr8:119512999(-) A-I      intronic
chr8:119313081(-) A-I      intronic
chr8:119288947(-) A-I      intronic
chr8:119512828(-) A-I      intronic
chr8:119351412(-) A-I      intronic
chr8:119351436(-) A-I      intronic
chr8:119351444(-) A-I      intronic
chr8:119442717(-) A-I      intronic
chr8:119351486(-) A-I      intronic
chr8:119512429(-) A-I      intronic
chr8:119310657(-) A-I      intronic
chr8:119351555(-) A-I      intronic
chr8:119351563(-) A-I      intronic
chr8:119352864(-) A-I      intronic
chr8:119352925(-) A-I      intronic
chr8:119360775(-) A-I      intronic
chr8:119360795(-) A-I      intronic
chr8:119360821(-) A-I      intronic
chr8:119360870(-) A-I      intronic
chr8:119362174(-) A-I      intronic
chr8:119362243(-) A-I      intronic
chr8:119362256(-) A-I      intronic
chr8:119362267(-) A-I      intronic
chr8:119313092(-) A-I      intronic
chr8:119369650(-) A-I      intronic
chr8:119369609(-) A-I      intronic
chr8:119360460(-) A-I      intronic
chr8:119313098(-) A-I      intronic
chr8:119313107(-) A-I      intronic
chr8:119360454(-) A-I      intronic
chr8:119313145(-) A-I      intronic
chr8:119313222(-) A-I      intronic
chr8:119313223(-) A-I      intronic
chr8:119442091(-) A-I      intronic
chr8:119313276(-) A-I      intronic
chr8:119330754(-) A-I      intronic
chr8:119353792(-) A-I      intronic
chr8:119569593(-) A-I      intronic
chr8:119569602(-) A-I      intronic
chr8:119569605(-) A-I      intronic
chr8:119573946(-) A-I      intronic
chr8:119573949(-) A-I      intronic
chr8:119310643(-) A-I      intronic
chr8:119490126(-) A-I      intronic
chr8:119247698(-) A-I      intronic
chr8:119313039(-) A-I      intronic
chr8:119310639(-) A-I      intronic
chr8:119490063(-) A-I      intronic
chr8:119489509(-) A-I      intronic
chr8:119247677(-) A-I      intronic
chr8:119313036(-) A-I      intronic
chr8:119359375(-) A-I      intronic
chr8:119568947(-) A-I      intronic
chr8:119310637(-) A-I      intronic
chr8:119585502(-) A-I      intronic
chr8:119568959(-) A-I      intronic
chr8:119362245(-) A-I      intronic
chr8:119362163(-) A-I      intronic
chr8:119489508(-) A-I      intronic
chr8:119362132(-) A-I      intronic
chr8:119362123(-) A-I      intronic
chr8:119362108(-) A-I      intronic
chr8:119360467(-) A-I      intronic
chr8:119514059(-) A-I      intronic
chr8:119512420(-) A-I      intronic
chr8:119313074(-) A-I      intronic
chr8:119512403(-) A-I      intronic
chr8:119288945(-) A-I      intronic
chr8:119310650(-) A-I      intronic
chr8:119360444(-) A-I      intronic
chr8:119280970(-) A-I      intronic
chr8:119619679(-) A-I      intronic
chr8:119216947(-) A-I      intronic
chr8:119353000(-) A-I      intronic
chr8:119348073(-) A-I      intronic
chr8:119216917(-) A-I      intronic
chr8:119512386(-) A-I      intronic
chr8:119280897(-) A-I      intronic
chr8:119346991(-) A-I      intronic
chr8:119346868(-) A-I      intronic
chr8:119346867(-) A-I      intronic
chr8:119297069(-) A-I      intronic
chr8:119362284(-) A-I      intronic
chr8:119378895(-) A-I      intronic
chr8:119389423(-) A-I      intronic
chr8:119401771(-) A-I      intronic
chr8:119490142(-) A-I      intronic
chr8:119401830(-) A-I      intronic
chr8:119404389(-) A-I      intronic
chr8:119404423(-) A-I      intronic
chr8:119280819(-) A-I      intronic
chr8:119313046(-) A-I      intronic
chr8:119408008(-) A-I      intronic
chr8:119442070(-) A-I      intronic
chr8:119370327(-) A-I      intronic
chr8:119512950(-) A-I      intronic
chr8:119353006(-) A-I      intronic
chr8:119437680(-) A-I      intronic
chr8:119328529(-) A-I      intronic
chr8:119441953(-) A-I      intronic
chr8:119247547(-) A-I      intronic
chr8:119486899(-) A-I      intronic
chr8:119328517(-) A-I      intronic
chr8:119435297(-) A-I      intronic
chr8:119486898(-) A-I      intronic
chr8:119442893(-) A-I      intronic
chr8:119247629(-) A-I      intronic
chr8:119370378(-) A-I      intronic
chr8:119520305(-) A-I      intronic
chr8:119512933(-) A-I      intronic
chr8:119246783(-) A-I      intronic
chr8:119489593(-) A-I      intronic
chr8:119489594(-) A-I      intronic
chr8:119362272(-) A-I      intronic
chr8:119289032(-) A-I      intronic
chr8:119512800(-) A-I      intronic
chr8:119370298(-) A-I      intronic
chr8:119437732(-) A-I      intronic
chr8:119461836(-) A-I      intronic
chr8:119329111(-) A-I      intronic
chr8:119362285(-) A-I      intronic
chr8:119471370(-) A-I      intronic
chr8:119369614(-) A-I      intronic
chr8:119362255(-) A-I      intronic
chr8:119486370(-) A-I      intronic
chr8:119461465(-) A-I      intronic
chr8:119429458(-) A-I      intronic
chr8:119442827(-) A-I      intronic
chr8:119369653(-) A-I      intronic
chr8:119289139(-) A-I      intronic
chr8:119289049(-) A-I      intronic
chr8:119410526(-) A-I      intronic
chr8:119369677(-) A-I      intronic
chr8:119512857(-) A-I      intronic
chr8:119486821(-) A-I      intronic
chr8:119490132(-) A-I      intronic
chr8:119247676(-) A-I      intronic
chr8:119369745(-) A-I      intronic
chr8:119442119(-) A-I      intronic
chr8:119484362(-) A-I      intronic
chr8:119487286(-) A-I      intronic
chr8:119490018(-) A-I      intronic
chr8:119369633(-) A-I      intronic
chr8:119512455(-) A-I      intronic
chr8:119442858(-) A-I      intronic
chr8:119352868(-) A-I      intronic
chr8:119484404(-) A-I      intronic
chr8:119486757(-) A-I      intronic
chr8:119512554(-) A-I      intronic
chr8:119362164(-) A-I      intronic
chr8:119352994(-) A-I      intronic
chr8:119410307(-) A-I      intronic
chr8:119359321(-) A-I      intronic
chr8:119369568(-) A-I      intronic
chr8:119351401(-) A-I      intronic
chr8:119352945(-) A-I      intronic
chr8:119246855(-) A-I      intronic
chr8:119486338(-) A-I      intronic
chr8:119254249(-) A-I      intronic
chr8:119329166(-) A-I      intronic
chr8:119489365(-) A-I      intronic
chr8:119484378(-) A-I      intronic
chr8:119487243(-) A-I      intronic
chr8:119486907(-) A-I      intronic
chr8:119247632(-) A-I      intronic
chr8:119328539(-) A-I      intronic
chr8:119486905(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SAMD12
chr8:119329168(-) A-I intron -    22327324
chr8:119461060(-) A-I intron -    21960545
chr8:119461083(-) A-I intron -    21960545
chr8:119569642(-) A-I intron -    21960545
chr8:119246714(-) A-G intron -    22484847
chr8:119246855(-) A-G intron -    22484847
chr8:119246936(-) A-G intron -    22484847
chr8:119246949(-) G-T intron -    22484847
chr8:119247629(-) A-G intron -    22484847
chr8:119247632(-) A-G intron -    22484847
chr8:119247676(-) A-G intron -    22484847
chr8:119289139(-) A-G intron -    22484847
chr8:119430811(-) T-C intron -    22484847
chr8:119435285(-) T-C intron -    22484847
chr8:119435297(-) A-G intron -    22484847
chr8:119441889(-) A-G intron -    22484847
chr8:119441950(-) A-G intron -    22484847
chr8:119442033(-) A-G intron -    22484847
chr8:119442119(-) A-G intron -    22484847
chr8:119442784(-) A-G intron -    22484847
chr8:119442827(-) A-G intron -    22484847
chr8:119442858(-) A-G intron -    22484847
chr8:119461465(-) A-G intron -    22484847
chr8:119486757(-) A-G intron -    22484847
chr8:119486907(-) A-G intron -    22484847
chr8:119487243(-) A-G intron -    22484847
chr8:119487260(-) A-G intron -    22484847
chr8:119487286(-) A-G intron -    22484847
chr8:119489594(-) A-G intron -    22484847
chr8:119490018(-) A-G intron -    22484847
chr8:119512554(-) A-G intron -    22484847
chr8:119512993(-) A-G intron -    22484847
chr8:119543170(-) A-T intron -    22484847
chr8:119310698(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SAMD12
chr8:119206129-119206130(-) m6A 3'UTR       27773535
chr8:119206147-119206148(-) m6A 3'UTR       27773535
chr8:119207104-119207105(-) m6A 3'UTR       24209618//27773535//22608085
chr8:119207184-119207185(-) m6A 3'UTR       24284625//24209618//27773535//22608085
chr8:119207202-119207203(-) m6A 3'UTR       24284625//24209618//27773535//22608085
chr8:119207257-119207258(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085
chr8:119207280-119207281(-) m6A 3'UTR       24981863//27773535//22575960//22608085
chr8:119207303-119207304(-) m6A 3'UTR       24981863//27773535//22608085
chr8:119207393-119207394(-) m6A 3'UTR       24209618//24981863//27773535//22608085
chr8:119207471-119207472(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr8:119207476-119207477(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr8:119207499-119207500(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr8:119207509-119207510(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr8:119207558-119207559(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr8:119207588-119207589(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr8:119207739-119207740(-) m6A 3'UTR       24209618//25456834//27773535//22608085
chr8:119207797-119207798(-) m6A 3'UTR       24209618//25456834//24981863//27773535//22608085
chr8:119207850-119207851(-) m6A 3'UTR       24209618//25456834//24981863//27773535//22608085
chr8:119207890-119207891(-) m6A 3'UTR       24209618//24981863//27773535//22608085
chr8:119207901-119207902(-) m6A 3'UTR       24209618//24981863//27773535//22608085
chr8:119207955-119207956(-) m6A 3'UTR       24209618//24981863//27773535//22608085
chr8:119207977-119207978(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr8:119208133-119208134(-) m6A 3'UTR       24284625//24209618//22608085
chr8:119208156-119208157(-) m6A 3'UTR       24284625//24209618//22608085
chr8:119208193-119208194(-) m6A 3'UTR       24209618//22608085
chr8:119208212-119208213(-) m6A 3'UTR       -
chr8:119208269-119208270(-) m6A 3'UTR       24284625//25456834//27773536
chr8:119208494-119208495(-) m6A 3'UTR       27773535
chr8:119209228-119209229(-) m6A 3'UTR       -
chr8:119209300-119209301(-) m6A 3'UTR       27773535
chr8:119209705-119209706(-) m6A 3'UTR       24284625//27773535//22608085
chr8:119209839-119209840(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr8:119209880-119209881(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr8:119209904-119209905(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr8:119209947-119209948(-) m6A 3'UTR       24209618//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SAMD12
Exosome Blood     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H11-5p
Interactor2: SAMD12

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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