Basic Information:

  VIRBase ID:  

VHID00178217

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H11-5p:  MIMAT0014697          ABCB5:  NM_001163942     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H11-5p	ABCB5
miRBase Accession/Entrez ID	MIMAT0014697	340273
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ABCB5alpha//ABCB5beta//EST422562

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ABCB5	chr7:20705632(+) A-I      intronic chr7:20703511(+) A-I      intronic chr7:20705577(+) A-I      intronic chr7:20705504(+) A-I      intronic chr7:20705502(+) A-I      intronic chr7:20705738(+) A-I      intronic chr7:20705496(+) A-I      intronic chr7:20759826(+) A-I      intronic chr7:20759827(+) A-I      intronic chr7:20759837(+) A-I      intronic chr7:20759844(+) A-I      intronic chr7:20759855(+) A-I      intronic chr7:20703513(+) A-I      intronic chr7:20759856(+) A-I      intronic chr7:20762272(+) A-I      intronic chr7:20762259(+) A-I      intronic chr7:20762257(+) A-I      intronic chr7:20762256(+) A-I      intronic chr7:20705682(+) A-I      intronic chr7:20705672(+) A-I      intronic chr7:20696630(+) A-I      intronic chr7:20705664(+) A-I      intronic chr7:20701190(+) A-I      intronic chr7:20705662(+) A-I      intronic chr7:20705641(+) A-I      intronic chr7:20705570(+) A-I      intronic chr7:20705543(+) A-I      intronic chr7:20705537(+) A-I      intronic chr7:20760330(+) A-I      intronic chr7:20760322(+) A-I      intronic chr7:20705529(+) A-I      intronic chr7:20705699(+) A-I      intronic chr7:20705603(+) A-I      intronic chr7:20760305(+) A-I      intronic chr7:20705753(+) A-I      intronic chr7:20701220(+) A-I      intronic chr7:20705702(+) A-I      intronic chr7:20705743(+) A-I      intronic chr7:20696616(+) A-I      intronic chr7:20705633(+) A-I      intronic chr7:20705635(+) A-I      intronic chr7:20705687(+) A-I      intronic chr7:20796186(+) A-I      3'UTR chr7:20796178(+) A-I      3'UTR chr7:20796172(+) A-I      3'UTR chr7:20796146(+) A-I      3'UTR chr7:20796082(+) A-I      3'UTR chr7:20796080(+) A-I      3'UTR chr7:20796079(+) A-I      3'UTR chr7:20796070(+) A-I      3'UTR chr7:20796046(+) A-I      3'UTR chr7:20796223(+) A-I      3'UTR chr7:20699481(+) A-I      3'UTR chr7:20796090(+) A-I      3'UTR chr7:20699436(+) A-I      3'UTR chr7:20796056(+) A-I      3'UTR chr7:20796065(+) A-I      3'UTR chr7:20796211(+) A-I      3'UTR chr7:20796198(+) A-I      3'UTR chr7:20699529(+) A-I      3'UTR chr7:20696644(+) A-I      intronic chr7:20704457(+) A-I      intronic chr7:20701261(+) A-I      intronic chr7:20767272(+) A-I      intronic chr7:20751369(+) A-I      intronic chr7:20696657(+) A-I      intronic chr7:20699407(+) A-I      3'UTR chr7:20699468(+) A-I      3'UTR chr7:20699497(+) A-I      3'UTR chr7:20699496(+) A-I      3'UTR chr7:20699411(+) A-I      3'UTR chr7:20699541(+) A-I      3'UTR chr7:20699446(+) A-I      3'UTR chr7:20705783(+) A-I      intronic chr7:20701287(+) A-I      intronic chr7:20701257(+) A-I      intronic chr7:20701418(+) A-I      intronic chr7:20701417(+) A-I      intronic chr7:20710541(+) A-I      intronic chr7:20705646(+) A-I      intronic chr7:20754855(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ABCB5	chr7:20699407(+) A-I exon 3'UTR    15258596 chr7:20699468(+) A-I exon 3'UTR    15258596 chr7:20699487(+) A-I exon 3'UTR    15258596 chr7:20699496(+) A-I exon 3'UTR    15258596 chr7:20699497(+) A-I exon 3'UTR    15258596 chr7:20699541(+) A-I exon 3'UTR    15258596 chr7:20699581(+) A-I exon 3'UTR    15258596

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ABCB5	chr7:20686975-20686976(+) Gm 5'UTR//exon//intron       16381836 chr7:20686976-20686977(+) Gm 5'UTR//exon//intron       16381836

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ABCB5	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H11-5p
Interactor2: ABCB5

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg