Basic Information:

  VIRBase ID:  

VHID00178211

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H11-5p:  MIMAT0014697          CYB561D1:  NM_182580     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H11-5p	CYB561D1
miRBase Accession/Entrez ID	MIMAT0014697	284613
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CYB561D1	chr1:110037283(+) A-I      intronic chr1:110037380(+) A-I      intronic chr1:110037298(+) A-I      intronic chr1:110037282(+) A-I      intronic chr1:110037281(+) A-I      intronic chr1:110042249(+) A-I      3'UTR chr1:110042169(+) A-I      3'UTR chr1:110037348(+) A-I      intronic chr1:110042047(+) A-I      3'UTR chr1:110037487(+) A-I      intronic chr1:110042018(+) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CYB561D1	chr1:110036708-110036709(+) m6A 5'UTR       24981863 chr1:110036811-110036812(+) m6A CDS//intron       24981863 chr1:110038421-110038422(+) m6A 3'UTR//CDS       - chr1:110038482-110038483(+) m6A 3'UTR//CDS       25456834//24981863 chr1:110038536-110038537(+) m6A 3'UTR//CDS       25456834//24981863//22608085 chr1:110038700-110038701(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22608085 chr1:110038922-110038923(+) m6A 3'UTR//intron       24284625//24209618//24981863//22608085 chr1:110039002-110039003(+) m6A 3'UTR//intron       24284625//24209618//24981863//22608085 chr1:110039011-110039012(+) m6A 3'UTR//intron       24284625//24209618//24981863//22608085 chr1:110039123-110039124(+) m6A 3'UTR//intron       24209618//24981863 chr1:110042121-110042122(+) m6A 3'UTR//intron       24209618

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CYB561D1	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol HCC cell line (HepG2)     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H11-5p
Interactor2: CYB561D1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg