Basic Information:

  VIRBase ID:  

VHID00178210

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H11-5p:  MIMAT0014697          ZNF780A:  NM_001142577     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H11-5p	ZNF780A
miRBase Accession/Entrez ID	MIMAT0014697	284323
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ZNF780

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ZNF780A	chr19:40591778(-) A-I      intronic chr19:40591705(-) A-I      intronic chr19:40574153(-) A-I      intronic chr19:40591730(-) A-I      intronic chr19:40592707(-) A-I      intronic chr19:40592734(-) A-I      intronic chr19:40573847(-) A-I      intronic chr19:40574121(-) A-I      intronic chr19:40591687(-) A-I      intronic chr19:40589361(-) A-I      intronic chr19:40592869(-) A-I      intronic chr19:40592792(-) A-I      intronic chr19:40592672(-) A-I      intronic chr19:40591621(-) A-I      intronic chr19:40574129(-) A-I      intronic chr19:40589485(-) A-I      intronic chr19:40591639(-) A-I      intronic chr19:40589380(-) A-I      intronic chr19:40591704(-) A-I      intronic chr19:40592789(-) A-I      intronic chr19:40574190(-) A-I      intronic chr19:40589471(-) A-I      intronic chr19:40574081(-) A-I      intronic chr19:40591532(-) A-I      intronic chr19:40574146(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ZNF780A	chr19:40575645-40575646(-) m6A 3'UTR       24981863//27773535 chr19:40575657-40575658(-) m6A 3'UTR       24981863//27773535 chr19:40579646-40579647(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr19:40579667-40579668(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr19:40579736-40579737(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr19:40579880-40579881(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085 chr19:40579899-40579900(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085 chr19:40579927-40579928(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085 chr19:40579983-40579984(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr19:40580011-40580012(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr19:40580048-40580049(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr19:40580122-40580123(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr19:40580179-40580180(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085 chr19:40580262-40580263(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085 chr19:40580346-40580347(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085 chr19:40580383-40580384(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085 chr19:40580450-40580451(-) m6A CDS//intron       24284625//24981863//27773535//27371828//22608085 chr19:40580515-40580516(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr19:40580599-40580600(-) m6A CDS//intron       24284625//27773535//22608085 chr19:40580683-40580684(-) m6A CDS//intron       24981863//27773535//22608085 chr19:40580767-40580768(-) m6A CDS//intron       25456834//24981863//27773535//22608085 chr19:40580784-40580785(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr19:40580815-40580816(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr19:40580918-40580919(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr19:40580962-40580963(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr19:40581019-40581020(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085 chr19:40581103-40581104(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr19:40581140-40581141(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr19:40581187-40581188(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr19:40581206-40581207(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr19:40581271-40581272(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr19:40581355-40581356(-) m6A CDS//intron       24981863//27773535//22608085 chr19:40581382-40581383(-) m6A CDS//intron       24981863//27773535//22608085 chr19:40581439-40581440(-) m6A CDS//intron       24981863//27773535//22608085 chr19:40581523-40581524(-) m6A CDS//intron       24981863//27773535//22608085 chr19:40581560-40581561(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr19:40581607-40581608(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr19:40581626-40581627(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr19:40581691-40581692(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr19:40581775-40581776(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr19:40581859-40581860(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085 chr19:40581907-40581908(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr19:40581961-40581962(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr19:40581973-40581974(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr19:40582045-40582046(-) m6A CDS       24284625//24981863//27773535//22608085 chr19:40582096-40582097(-) m6A CDS       24284625//27773535//22608085 chr19:40587743-40587744(-) m6A CDS       27773535//22608085 chr19:40587804-40587805(-) m6A CDS       27773535 chr19:40589040-40589041(-) m6A CDS       27773535 chr19:40589068-40589069(-) m6A 5'UTR//CDS       27773535 chr19:40596118-40596119(-) m6A 5'UTR//intron       24981863 chr19:40596199-40596200(-) m6A 5'UTR//intron       24981863 chr19:40596693-40596694(-) m6A 5'UTR//intron       25456834//24981863//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ZNF780A	Chromatin K562 cells     - Exosome Blood     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H11-5p
Interactor2: ZNF780A

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg