Basic Information:

  VIRBase ID:  

VHID00178206

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H11-5p:  MIMAT0014697          HSPA12A:  NM_025015     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H11-5p	HSPA12A
miRBase Accession/Entrez ID	MIMAT0014697	259217
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	HSPA12A	chr10:118471179(-) A-I      intronic chr10:118495396(-) A-I      intronic chr10:118442460(-) A-I      intronic chr10:118442247(-) A-I      intronic chr10:118468913(-) A-I      intronic chr10:118445024(-) A-I      intronic chr10:118487741(-) A-I      intronic chr10:118442481(-) A-I      intronic chr10:118455036(-) A-I      intronic chr10:118489474(-) A-I      intronic chr10:118444380(-) A-I      intronic chr10:118492049(-) A-I      intronic chr10:118490748(-) A-I      intronic chr10:118491928(-) A-I      intronic chr10:118487367(-) A-I      intronic chr10:118490824(-) A-I      intronic chr10:118490823(-) A-I      intronic chr10:118490758(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	HSPA12A	chr10:118430714-118430715(-) m6A 3'UTR       24981863//27773535//22608085 chr10:118430749-118430750(-) m6A 3'UTR       24981863//27773535//22608085 chr10:118430762-118430763(-) m6A 3'UTR       24981863//27773535//22608085 chr10:118430790-118430791(-) m6A 3'UTR       24981863//27773535//22608085 chr10:118430800-118430801(-) m6A 3'UTR       24981863//27773535//22608085 chr10:118430856-118430857(-) m6A 3'UTR       24981863 chr10:118431447-118431448(-) m6A 3'UTR       24981863 chr10:118431696-118431697(-) m6A 3'UTR       25456834 chr10:118431813-118431814(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr10:118431825-118431826(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr10:118431874-118431875(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr10:118431926-118431927(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr10:118431953-118431954(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr10:118431979-118431980(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr10:118431998-118431999(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr10:118432019-118432020(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr10:118432031-118432032(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr10:118432045-118432046(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr10:118432262-118432263(-) m6A 3'UTR       24284625//24209618//24981863//22608085 chr10:118432416-118432417(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr10:118432428-118432429(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr10:118432435-118432436(-) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr10:118432511-118432512(-) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr10:118432543-118432544(-) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr10:118432569-118432570(-) m6A 3'UTR       24284625//24209618//24981863//22608085 chr10:118432719-118432720(-) m6A 3'UTR       24981863//22608085 chr10:118432762-118432763(-) m6A 3'UTR       24981863//22608085 chr10:118433114-118433115(-) m6A 3'UTR       24981863//22608085 chr10:118433376-118433377(-) m6A 3'UTR       24981863 chr10:118433409-118433410(-) m6A 3'UTR       24981863 chr10:118433414-118433415(-) m6A 3'UTR       24981863 chr10:118434107-118434108(-) m6A 3'UTR       24284625//24209618//24981863//22608085 chr10:118434162-118434163(-) m6A 3'UTR       24284625//24209618//24981863//22608085 chr10:118434261-118434262(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr10:118434370-118434371(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr10:118434389-118434390(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr10:118434428-118434429(-) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr10:118434691-118434692(-) m6A CDS       25456834//22608085 chr10:118434748-118434749(-) m6A CDS       25456834//22608085 chr10:118434820-118434821(-) m6A CDS       25456834 chr10:118434889-118434890(-) Y CDS       26075521 chr10:118467580-118467581(-) m6A 5'UTR//intron       27773536 chr10:118501972-118501973(-) m6A CDS       24981863//27773536 chr10:118502039-118502040(-) m6A 5'UTR       24981863//27773536 chr10:118502045-118502046(-) m6A 5'UTR       24981863//27773536 chr10:118502074-118502075(-) m6A 5'UTR       24981863//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	HSPA12A	Cytosol HCC cell line (HepG2)     - Exosome Blood     - Membrane HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H11-5p
Interactor2: HSPA12A

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg