Basic Information:

  VIRBase ID:  

VHID00178199

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H11-5p:  MIMAT0014697          LRRC45:  NM_144999     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H11-5p	LRRC45
miRBase Accession/Entrez ID	MIMAT0014697	201255
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LRRC45	chr17:79981332-79981333(+) m6A 5'UTR//exon       24284625//25456834//24981863 chr17:79981365-79981366(+) m6A 5'UTR//exon       24284625//25456834//24981863 chr17:79981444-79981445(+) m6A 5'UTR//exon       24284625 chr17:79981625-79981626(+) m6A CDS//exon       24284625 chr17:79981654-79981655(+) m6A CDS//exon       24284625 chr17:79982207-79982208(+) m6A 5'UTR//CDS//intron       24284625 chr17:79982609-79982610(+) m6A 5'UTR//CDS//exon       24284625 chr17:79982623-79982624(+) m6A 5'UTR//CDS//exon       24284625 chr17:79982892-79982893(+) m6A 5'UTR//CDS//exon       24284625 chr17:79982970-79982971(+) m6A 5'UTR//CDS//exon       24284625 chr17:79983302-79983303(+) m6A CDS       - chr17:79983322-79983323(+) m6A CDS       - chr17:79983333-79983334(+) m6A CDS       - chr17:79983338-79983339(+) m6A CDS       - chr17:79983350-79983351(+) m6A CDS       - chr17:79984798-79984799(+) m6A CDS//exon       - chr17:79984822-79984823(+) m6A CDS//exon       24284625 chr17:79985279-79985280(+) m6A CDS//exon       24284625//27371828 chr17:79985936-79985937(+) m6A CDS//exon       24284625 chr17:79986132-79986133(+) m6A CDS//exon       - chr17:79986143-79986144(+) m6A CDS//exon       - chr17:79986167-79986168(+) m6A CDS//exon       - chr17:79986182-79986183(+) m6A CDS//exon       - chr17:79986323-79986324(+) m6A CDS//exon       - chr17:79986497-79986498(+) m6A CDS//exon       24284625//24209618 chr17:79986519-79986520(+) m6A CDS//exon       24284625//24209618//24981863 chr17:79986533-79986534(+) m6A CDS//exon       24284625//24209618//24981863 chr17:79986705-79986706(+) m6A exon//intron       27371828 chr17:79986712-79986713(+) m6A exon//intron       27371828 chr17:79986737-79986738(+) m6A exon//intron       - chr17:79986781-79986782(+) m6A exon//intron       27371828 chr17:79986863-79986864(+) m6A exon//intron       27371828 chr17:79986879-79986880(+) m6A exon//intron       27371828 chr17:79987965-79987966(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863 chr17:79987975-79987976(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863 chr17:79988048-79988049(+) m6A 3'UTR//CDS       24284625//24209618//24981863 chr17:79988210-79988211(+) m6A 3'UTR//CDS       24284625//24209618//24981863//22575960 chr17:79988517-79988518(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr17:79988660-79988661(+) m6A CDS       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr17:79988682-79988683(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr17:79988695-79988696(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr17:79988737-79988738(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr17:79988774-79988775(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr17:79988838-79988839(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773536//22575960//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LRRC45	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Insoluble cytoplasm K562 cells     - Membrane HCC cell line (HepG2)     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H11-5p
Interactor2: LRRC45

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg