Detail Information

Basic Information:


  VIRBase ID:  

VHID00178197

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H11-5p:           NLRC3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H11-5p NLRC3
miRBase
Accession/Entrez ID		 MIMAT0014697 197358
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - CLR16.2//NOD3

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NLRC3
chr16:3624129(-) A-I      intronic
chr16:3622453(-) A-I      intronic
chr16:3622466(-) A-I      intronic
chr16:3619521(-) A-I      intronic
chr16:3622471(-) A-I      intronic
chr16:3622469(-) A-I      intronic
chr16:3622468(-) A-I      intronic
chr16:3622373(-) A-I      intronic
chr16:3624130(-) A-I      intronic
chr16:3624132(-) A-I      intronic
chr16:3624148(-) A-I      intronic
chr16:3624156(-) A-I      intronic
chr16:3624161(-) A-I      intronic
chr16:3622358(-) A-I      intronic
chr16:3624100(-) A-I      intronic
chr16:3622492(-) A-I      intronic
chr16:3624116(-) A-I      intronic
chr16:3624209(-) A-I      intronic
chr16:3624220(-) A-I      intronic
chr16:3622485(-) A-I      intronic
chr16:3619496(-) A-I      intronic
chr16:3619511(-) A-I      intronic
chr16:3622456(-) A-I      intronic
chr16:3622372(-) A-I      intronic
chr16:3619515(-) A-I      intronic
chr16:3619206(-) A-I      intronic
chr16:3595486(-) A-I      intronic
chr16:3597896(-) A-I      intronic
chr16:3605638(-) A-I      intronic
chr16:3605639(-) A-I      intronic
chr16:3605643(-) A-I      intronic
chr16:3618633(-) A-I      intronic
chr16:3596201(-) A-I      intronic
chr16:3597767(-) A-I      intronic
chr16:3619171(-) A-I      intronic
chr16:3623390(-) A-I      intronic
chr16:3623422(-) A-I      intronic
chr16:3623227(-) A-I      intronic
chr16:3623202(-) A-I      intronic
chr16:3622562(-) A-I      intronic
chr16:3622561(-) A-I      intronic
chr16:3622493(-) A-I      intronic
chr16:3622465(-) A-I      intronic
chr16:3622459(-) A-I      intronic
chr16:3618689(-) A-I      intronic
chr16:3619602(-) A-I      intronic
chr16:3595437(-) A-I      intronic
chr16:3595418(-) A-I      intronic
chr16:3595400(-) A-I      intronic
chr16:3595202(-) A-I      intronic
chr16:3595189(-) A-I      intronic
chr16:3619568(-) A-I      intronic
chr16:3619560(-) A-I      intronic
chr16:3626775(-) A-I      intronic
chr16:3597838(-) A-I      intronic
chr16:3622437(-) A-I      intronic
chr16:3623887(-) A-I      intronic
chr16:3623888(-) A-I      intronic
chr16:3623922(-) A-I      intronic
chr16:3624078(-) A-I      intronic
chr16:3624109(-) A-I      intronic
chr16:3624235(-) A-I      intronic
chr16:3624717(-) A-I      intronic
chr16:3624780(-) A-I      intronic
chr16:3624844(-) A-I      intronic
chr16:3624916(-) A-I      intronic
chr16:3626832(-) A-I      intronic
chr16:3619674(-) A-I      intronic
chr16:3623346(-) A-I      intronic
chr16:3619650(-) A-I      intronic
chr16:3619639(-) A-I      intronic
chr16:3610213(-) A-I      intronic
chr16:3595417(-) A-I      intronic
chr16:3622440(-) A-I      intronic
chr16:3619678(-) A-I      intronic
chr16:3618606(-) A-I      intronic
chr16:3624886(-) A-I      intronic
chr16:3618628(-) A-I      intronic
chr16:3619440(-) A-I      intronic
chr16:3610181(-) A-I      intronic
chr16:3621477(-) A-I      intronic
chr16:3624281(-) A-I      intronic
chr16:3623854(-) A-I      intronic
chr16:3594921(-) A-I      intronic
chr16:3597888(-) A-I      intronic
chr16:3618642(-) A-I      intronic
chr16:3622363(-) A-I      intronic
chr16:3626816(-) A-I      intronic
chr16:3618027(-) A-I      intronic
chr16:3623880(-) A-I      intronic
chr16:3617690(-) A-I      intronic
chr16:3595487(-) A-I      intronic
chr16:3623406(-) A-I      intronic
chr16:3619612(-) A-I      intronic
chr16:3618465(-) A-I      intronic
chr16:3606622(-) A-I      intronic
chr16:3617686(-) A-I      intronic
chr16:3619537(-) A-I      intronic
chr16:3623371(-) A-I      intronic
chr16:3621462(-) A-I      intronic
chr16:3621430(-) A-I      intronic
chr16:3611272(-) A-I      intronic
chr16:3624881(-) A-I      intronic
chr16:3621498(-) A-I      intronic
chr16:3595344(-) A-I      intronic
chr16:3609823(-) A-I      intronic
chr16:3619516(-) A-I      intronic
chr16:3622484(-) A-I      intronic
chr16:3608146(-) A-I      intronic
chr16:3606070(-) A-I      intronic
chr16:3610275(-) A-I      intronic
chr16:3622427(-) A-I      intronic
chr16:3619671(-) A-I      intronic
chr16:3619648(-) A-I      intronic
chr16:3624121(-) A-I      intronic
chr16:3621677(-) A-I      intronic
chr16:3609754(-) A-I      intronic
chr16:3611203(-) A-I      intronic
chr16:3623174(-) A-I      intronic
chr16:3611226(-) A-I      intronic
chr16:3624162(-) A-I      intronic
chr16:3624126(-) A-I      intronic
chr16:3622757(-) A-I      intronic
chr16:3610276(-) A-I      intronic
chr16:3618522(-) A-I      intronic
chr16:3619175(-) A-I      intronic
chr16:3621434(-) A-I      intronic
chr16:3624198(-) A-I      intronic
chr16:3619220(-) A-I      intronic
chr16:3622930(-) A-I      intronic
chr16:3622497(-) A-I      intronic
chr16:3623877(-) A-I      intronic
chr16:3617612(-) A-I      intronic
chr16:3622404(-) A-I      intronic
chr16:3622399(-) A-I      intronic
chr16:3606126(-) A-I      intronic
chr16:3618049(-) A-I      intronic
chr16:3594075(-) A-I      intronic
chr16:3621382(-) A-I      intronic
chr16:3624139(-) A-I      intronic
chr16:3622516(-) A-I      intronic
chr16:3597952(-) A-I      intronic
chr16:3623316(-) A-I      intronic
chr16:3605179(-) A-I      intronic
chr16:3619505(-) A-I      intronic
chr16:3622834(-) A-I      intronic
chr16:3609871(-) A-I      intronic
chr16:3597857(-) A-I      intronic
chr16:3594689(-) A-I      intronic
chr16:3618093(-) A-I      intronic
chr16:3619252(-) A-I      intronic
chr16:3624841(-) A-I      intronic
chr16:3619232(-) A-I      intronic
chr16:3611239(-) A-I      intronic
chr16:3623935(-) A-I      intronic
chr16:3622514(-) A-I      intronic
chr16:3609725(-) A-I      intronic
chr16:3626828(-) A-I      intronic
chr16:3624066(-) A-I      intronic
chr16:3623216(-) A-I      intronic
chr16:3618480(-) A-I      intronic
chr16:3617876(-) A-I      intronic
chr16:3609777(-) A-I      intronic
chr16:3624219(-) A-I      intronic
chr16:3622769(-) A-I      intronic
chr16:3617995(-) A-I      intronic
chr16:3619617(-) A-I      intronic
chr16:3624120(-) A-I      intronic
chr16:3605834(-) A-I      NonSyn:Gln->Arg
chr16:3620245(-) A-I      intronic
chr16:3626661(-) A-I      intronic
chr16:3622556(-) A-I      intronic
chr16:3617609(-) A-I      intronic
chr16:3619478(-) A-I      intronic
chr16:3624876(-) A-I      intronic
chr16:3626792(-) A-I      intronic
chr16:3623215(-) A-I      intronic
chr16:3624164(-) A-I      intronic
chr16:3623293(-) A-I      intronic
chr16:3623256(-) A-I      intronic
chr16:3623198(-) A-I      intronic
chr16:3626736(-) A-I      intronic
chr16:3619215(-) A-I      intronic
chr16:3622982(-) A-I      intronic
chr16:3623917(-) A-I      intronic
chr16:3609840(-) A-I      intronic
chr16:3623387(-) A-I      intronic
chr16:3610171(-) A-I      intronic
chr16:3611340(-) A-I      intronic
chr16:3595266(-) A-I      intronic
chr16:3622763(-) A-I      intronic
chr16:3597887(-) A-I      intronic
chr16:3619058(-) A-I      intronic
chr16:3623957(-) A-I      intronic
chr16:3624711(-) A-I      intronic
chr16:3624797(-) A-I      intronic
chr16:3602819(-) A-I      intronic
chr16:3624113(-) A-I      intronic
chr16:3619147(-) A-I      intronic
chr16:3623892(-) A-I      intronic
chr16:3606669(-) A-I      intronic
chr16:3622902(-) A-I      intronic
chr16:3623858(-) A-I      intronic
chr16:3617592(-) A-I      intronic
chr16:3610267(-) A-I      intronic
chr16:3619567(-) A-I      intronic
chr16:3618714(-) A-I      intronic
chr16:3617583(-) A-I      intronic
chr16:3623376(-) A-I      intronic
chr16:3623306(-) A-I      intronic
chr16:3594769(-) A-I      intronic
chr16:3623958(-) A-I      intronic
chr16:3623254(-) A-I      intronic
chr16:3619680(-) A-I      intronic
chr16:3624718(-) A-I      intronic
chr16:3622851(-) A-I      intronic
chr16:3605688(-) A-I      intronic
chr16:3624087(-) A-I      intronic
chr16:3624264(-) A-I      intronic
chr16:3626760(-) A-I      intronic
chr16:3594913(-) A-I      intronic
chr16:3626837(-) A-I      intronic
chr16:3619618(-) A-I      intronic
chr16:3624152(-) A-I      intronic
chr16:3617661(-) A-I      intronic
chr16:3619502(-) A-I      intronic
chr16:3610481(-) A-I      intronic
chr16:3618462(-) A-I      intronic
chr16:3621518(-) A-I      intronic
chr16:3622389(-) A-I      intronic
chr16:3624851(-) A-I      intronic
chr16:3618471(-) A-I      intronic
chr16:3622950(-) A-I      intronic
chr16:3617949(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NLRC3
chr16:3624881(-) A-I intron -    22327324
chr16:3594913(-) A-G intron -    22484847
chr16:3595487(-) A-G intron -    22484847
chr16:3596512(-) T-C intron -    22484847
chr16:3596547(-) T-C intron -    22484847
chr16:3610181(-) A-G intron -    22484847
chr16:3611287(-) T-C intron -    22484847
chr16:3611290(-) T-C intron -    22484847
chr16:3611293(-) T-C intron -    22484847
chr16:3617592(-) A-G intron -    22484847
chr16:3619502(-) A-G intron -    22484847
chr16:3619516(-) A-G intron -    22484847
chr16:3619567(-) A-G intron -    22484847
chr16:3619617(-) A-G intron -    22484847
chr16:3619680(-) A-G intron -    22484847
chr16:3622497(-) A-G intron -    22484847
chr16:3622516(-) A-G intron -    22484847
chr16:3622757(-) A-G intron -    22484847
chr16:3622763(-) A-G intron -    22484847
chr16:3623216(-) A-G intron -    22484847
chr16:3623892(-) A-G intron -    22484847
chr16:3624066(-) A-G intron -    22484847
chr16:3624711(-) A-G intron -    22484847
chr16:3624851(-) A-G intron -    22484847
chr16:3624881(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NLRC3
chr16:3589375-3589376(-) m6A 3'UTR       -
chr16:3589494-3589495(-) m6A 3'UTR       -
chr16:3589507-3589508(-) m6A 3'UTR       -
chr16:3589521-3589522(-) m6A 3'UTR       -
chr16:3589537-3589538(-) m6A 3'UTR       -
chr16:3589565-3589566(-) m6A 3'UTR       -
chr16:3589586-3589587(-) m6A 3'UTR       -
chr16:3589595-3589596(-) m6A 3'UTR       -
chr16:3589720-3589721(-) m6A 3'UTR       -
chr16:3589749-3589750(-) m6A 3'UTR       28052920
chr16:3589754-3589755(-) m6A 3'UTR       28052920
chr16:3589788-3589789(-) m6A 3'UTR       28052920
chr16:3589815-3589816(-) m6A 3'UTR       28052920
chr16:3589886-3589887(-) m6A 3'UTR       27371828
chr16:3589893-3589894(-) m6A 3'UTR       27371828
chr16:3589911-3589912(-) m6A 3'UTR       27371828
chr16:3589974-3589975(-) m6A 3'UTR       27371828
chr16:3590063-3590064(-) m6A 3'UTR       27371828
chr16:3590071-3590072(-) m6A 3'UTR       27371828
chr16:3590088-3590089(-) m6A 3'UTR       27371828
chr16:3590254-3590255(-) m6A 3'UTR       -
chr16:3590260-3590261(-) m6A 3'UTR       -
chr16:3590338-3590339(-) m6A 3'UTR       -
chr16:3590387-3590388(-) m6A 3'UTR       -
chr16:3590460-3590461(-) m6A 3'UTR       -
chr16:3591506-3591507(-) m6A 3'UTR       27371828
chr16:3591571-3591572(-) m6A 3'UTR       28052920//27371828
chr16:3591771-3591772(-) m6A 3'UTR       25456834//27371828
chr16:3591856-3591857(-) m6A 3'UTR//CDS       27371828
chr16:3591891-3591892(-) m6A 3'UTR//CDS       27371828
chr16:3591903-3591904(-) m6A 3'UTR//CDS       27371828
chr16:3613307-3613308(-) m6A CDS       27371828
chr16:3613660-3613661(-) m6A CDS       27371828
chr16:3613681-3613682(-) m6A CDS       27371828
chr16:3613742-3613743(-) m6A CDS       27371828
chr16:3613862-3613863(-) m6A CDS       27371828
chr16:3614023-3614024(-) m6A CDS       27371828
chr16:3614095-3614096(-) m6A CDS//exon       27371828
chr16:3614200-3614201(-) m6A CDS//exon       27371828
chr16:3614224-3614225(-) m6A CDS//exon       27371828
chr16:3614251-3614252(-) m6A CDS//exon       27371828
chr16:3614428-3614429(-) m6A CDS//exon       27371828
chr16:3614483-3614484(-) m6A CDS//exon       27371828
chr16:3614563-3614564(-) m6A CDS//exon       27371828
chr16:3614576-3614577(-) m6A CDS//exon       27371828
chr16:3614628-3614629(-) m6A CDS//exon       27371828
chr16:3614644-3614645(-) m6A CDS//exon       27371828
chr16:3614691-3614692(-) m6A CDS//exon       27371828
chr16:3614758-3614759(-) m6A CDS//exon       27371828
chr16:3614892-3614893(-) m6A CDS//intron       27371828
chr16:3617316-3617317(-) m6A 5'UTR//exon//intron       27371828
chr16:3617323-3617324(-) m6A 5'UTR//exon//intron       27371828
chr16:3627283-3627284(-) m6A 5'UTR//exon       27371828
chr16:3627391-3627392(-) m6A 5'UTR       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate NLRC3
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H11-5p
Interactor2: NLRC3

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

Starting a new search, please wait ...