Detail Information

Basic Information:


  VIRBase ID:  

VHID00178168

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H11-5p:           CACNA2D4:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H11-5p CACNA2D4
miRBase
Accession/Entrez ID		 MIMAT0014697 93589
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - RCD4

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CACNA2D4
chr12:1949077(-) A-I      intronic
chr12:2019413(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CACNA2D4
chr12:1913962(-) G-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CACNA2D4
chr12:1901174-1901175(-) m6A 3'UTR//exon       27773535
chr12:1901259-1901260(-) m6A 3'UTR//exon       27773535
chr12:1901360-1901361(-) m6A 3'UTR//exon       27773535
chr12:1901650-1901651(-) m6A 3'UTR//exon       -
chr12:1901669-1901670(-) m6A 3'UTR//exon       -
chr12:1901757-1901758(-) m6A 3'UTR//exon       -
chr12:1901773-1901774(-) m6A 3'UTR//exon       -
chr12:1901781-1901782(-) m6A 3'UTR//exon       -
chr12:1901848-1901849(-) m6A 3'UTR//exon       -
chr12:1901899-1901900(-) m6A 3'UTR//exon       -
chr12:1901909-1901910(-) m6A 3'UTR//exon       -
chr12:1902066-1902067(-) m6A 3'UTR//exon       27773535
chr12:1902123-1902124(-) m6A 3'UTR//exon       27773535
chr12:1902133-1902134(-) m6A 3'UTR//exon       27773535
chr12:1902150-1902151(-) m6A 3'UTR//exon       27773535
chr12:1902211-1902212(-) m6A 3'UTR//exon       27773535
chr12:1902403-1902404(-) m6A 3'UTR//exon       24209618//27371828
chr12:1902411-1902412(-) m6A 3'UTR//exon       27371828
chr12:1902471-1902472(-) m6A 3'UTR//exon       -
chr12:1902509-1902510(-) m6A 3'UTR//exon       -
chr12:1902515-1902516(-) m6A 3'UTR//exon       -
chr12:1902647-1902648(-) m6A 3'UTR//exon       27371828
chr12:1902654-1902655(-) m6A 3'UTR//exon       27371828
chr12:1902893-1902894(-) m6A 3'UTR//CDS//exon       -
chr12:1902911-1902912(-) m6A 3'UTR//CDS//exon       -
chr12:1904360-1904361(-) m6A CDS//exon//intron       -
chr12:1904386-1904387(-) m6A CDS//exon//intron       -
chr12:1904417-1904418(-) m6A CDS//exon//intron       -
chr12:1904489-1904490(-) m6A 3'UTR//CDS//exon       -
chr12:1909439-1909440(-) m6A exon//intron       27371828
chr12:1909458-1909459(-) m6A exon//intron       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CACNA2D4
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H11-5p
Interactor2: CACNA2D4

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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