Detail Information

Basic Information:


  VIRBase ID:  

VHID00178155

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H11-5p:           SLC35B4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H11-5p SLC35B4
miRBase
Accession/Entrez ID		 MIMAT0014697 84912
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - YEA//YEA4

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLC35B4
chr7:133990694(-) A-I      intronic
chr7:133982570(-) A-I      intronic
chr7:133996406(-) A-I      intronic
chr7:133990600(-) A-I      intronic
chr7:133996258(-) A-I      intronic
chr7:133990561(-) A-I      intronic
chr7:133999483(-) A-I      intronic
chr7:133999455(-) A-I      intronic
chr7:133990560(-) A-I      intronic
chr7:133982566(-) A-I      intronic
chr7:133989918(-) A-I      intronic
chr7:133990604(-) A-I      intronic
chr7:133982537(-) A-I      intronic
chr7:133999425(-) A-I      intronic
chr7:133996285(-) A-I      intronic
chr7:133989967(-) A-I      intronic
chr7:133980840(-) A-I      intronic
chr7:133996259(-) A-I      intronic
chr7:133982622(-) A-I      intronic
chr7:133996215(-) A-I      intronic
chr7:133978824(-) A-I      3'UTR
chr7:133990519(-) A-I      intronic
chr7:133999515(-) A-I      intronic
chr7:133996241(-) A-I      intronic
chr7:133999484(-) A-I      intronic
chr7:133982628(-) A-I      intronic
chr7:133989902(-) A-I      intronic
chr7:133996250(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SLC35B4
chr7:133978544(-) G-A exon 3'UTR    22484847
chr7:133981940(-) A-G intron -    22484847
chr7:133981953(-) A-G intron -    22484847
chr7:133982537(-) A-G intron -    22484847
chr7:133989871(-) A-G intron -    22484847
chr7:133989967(-) A-G intron -    22484847
chr7:133990604(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLC35B4
chr7:133974088-133974089(-) m6A 3'UTR       27773535
chr7:133974170-133974171(-) m6A 3'UTR       24981863//27773535
chr7:133974211-133974212(-) m6A 3'UTR       24981863//27773535
chr7:133974222-133974223(-) m6A 3'UTR       24981863//27773535
chr7:133974266-133974267(-) m6A 3'UTR       24981863
chr7:133975642-133975643(-) m6A 3'UTR       26404942
chr7:133975666-133975667(-) m6A 3'UTR       24981863//26404942
chr7:133975690-133975691(-) m6A 3'UTR       24981863//26404942
chr7:133975706-133975707(-) m6A 3'UTR       24981863//26404942
chr7:133975733-133975734(-) m6A 3'UTR       24981863
chr7:133975756-133975757(-) m6A 3'UTR       24981863
chr7:133976167-133976168(-) m6A 3'UTR       24981863
chr7:133976228-133976229(-) m6A 3'UTR       24981863//22608085
chr7:133976330-133976331(-) m6A 3'UTR       24981863
chr7:133977149-133977150(-) m6A 3'UTR       -
chr7:133978469-133978470(-) Y 3'UTR       26075521
chr7:133978523-133978524(-) m6A 3'UTR       24284625//25456834//27371828//22608085
chr7:133978528-133978529(-) m6A 3'UTR       24284625//25456834//27371828//22608085
chr7:133978571-133978572(-) m6A 3'UTR       25456834//22608085
chr7:133978640-133978641(-) m6A 3'UTR       22608085
chr7:133978978-133978979(-) m6A 3'UTR       27773535
chr7:133978987-133978988(-) m6A 3'UTR       27773535
chr7:133979056-133979057(-) m6A 3'UTR       27773535
chr7:133979078-133979079(-) m6A 3'UTR       27773535
chr7:133979084-133979085(-) m6A 3'UTR       27773535
chr7:133979278-133979279(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr7:133979357-133979358(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr7:133979365-133979366(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr7:133979375-133979376(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr7:133979403-133979404(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr7:133979414-133979415(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr7:133979428-133979429(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr7:133979446-133979447(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr7:133979540-133979541(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr7:133979563-133979564(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr7:133979588-133979589(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr7:133979600-133979601(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr7:133979625-133979626(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr7:133979636-133979637(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr7:133979661-133979662(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr7:133979711-133979712(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr7:133979854-133979855(-) m6A exon//intron       24284625//27773535
chr7:133979904-133979905(-) m6A exon//intron       27773535
chr7:133979911-133979912(-) m6A exon//intron       27773535
chr7:133981154-133981155(-) m6A 3'UTR//CDS       27773535
chr7:134001644-134001645(-) m6A 5'UTR       24981863//27371828
chr7:134001691-134001692(-) m6A 5'UTR       24981863//27371828
chr7:134001708-134001709(-) m6A 5'UTR       24981863//27371828
chr7:134001753-134001754(-) m6A 5'UTR       24981863//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SLC35B4
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H11-5p
Interactor2: SLC35B4

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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