Basic Information:

  VIRBase ID:  

VHID00178045

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H11-5p:  MIMAT0014697          SZT2:  NM_001365999     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H11-5p	SZT2
miRBase Accession/Entrez ID	MIMAT0014697	23334
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C1orf84//DEE18//EIEE18//KIAA0467//KICS1//SZT2A//SZT2B

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SZT2	chr1:43899052(+) A-I      intronic chr1:43876068(+) A-I      3'UTR chr1:43876079(+) A-I      3'UTR chr1:43876138(+) A-I      3'UTR chr1:43903651(+) A-I      intronic chr1:43903676(+) A-I      intronic chr1:43876071(+) A-I      3'UTR chr1:43876115(+) A-I      3'UTR chr1:43865888(+) A-I      intronic chr1:43865735(+) A-I      intronic chr1:43865728(+) A-I      intronic chr1:43870805(+) A-I      intronic chr1:43865689(+) A-I      intronic chr1:43865679(+) A-I      intronic chr1:43865633(+) A-I      intronic chr1:43871807(+) A-I      intronic chr1:43865213(+) A-I      intronic chr1:43866649(+) A-I      intronic chr1:43865696(+) A-I      intronic chr1:43856726(+) A-I      intronic chr1:43862951(+) A-I      intronic chr1:43860444(+) A-I      intronic chr1:43857661(+) A-I      intronic chr1:43856761(+) A-I      intronic chr1:43856864(+) A-I      intronic chr1:43856810(+) A-I      intronic chr1:43863328(+) A-I      intronic chr1:43863324(+) A-I      intronic chr1:43862991(+) A-I      intronic chr1:43862983(+) A-I      intronic chr1:43864489(+) A-I      intronic chr1:43863340(+) A-I      intronic chr1:43862975(+) A-I      intronic chr1:43870804(+) A-I      intronic chr1:43869798(+) A-I      intronic chr1:43869671(+) A-I      intronic chr1:43866786(+) A-I      intronic chr1:43872021(+) A-I      3'UTR chr1:43876004(+) A-I      3'UTR chr1:43876167(+) A-I      3'UTR chr1:43875995(+) A-I      3'UTR chr1:43876051(+) A-I      3'UTR chr1:43876106(+) A-I      3'UTR chr1:43876176(+) A-I      3'UTR chr1:43876158(+) A-I      3'UTR chr1:43864686(+) A-I      intronic chr1:43864535(+) A-I      intronic chr1:43864692(+) A-I      intronic chr1:43864685(+) A-I      intronic chr1:43864726(+) A-I      intronic chr1:43864498(+) A-I      intronic chr1:43864536(+) A-I      intronic chr1:43864541(+) A-I      intronic chr1:43864640(+) A-I      intronic chr1:43864696(+) A-I      intronic chr1:43864620(+) A-I      intronic chr1:43864555(+) A-I      intronic chr1:43864701(+) A-I      intronic chr1:43864644(+) A-I      intronic chr1:43864630(+) A-I      intronic chr1:43864636(+) A-I      intronic chr1:43864733(+) A-I      intronic chr1:43864647(+) A-I      intronic chr1:43864533(+) A-I      intronic chr1:43864528(+) A-I      intronic chr1:43864714(+) A-I      intronic chr1:43864564(+) A-I      intronic chr1:43858292(+) A-I      intronic chr1:43861117(+) A-I      intronic chr1:43856937(+) A-I      intronic chr1:43875975(+) A-I      3'UTR chr1:43869817(+) A-I      intronic chr1:43865845(+) A-I      intronic chr1:43863299(+) A-I      intronic chr1:43858270(+) A-I      intronic chr1:43856739(+) A-I      intronic chr1:43860438(+) A-I      intronic chr1:43866796(+) A-I      intronic chr1:43866670(+) A-I      intronic chr1:43863047(+) A-I      intronic chr1:43862987(+) A-I      intronic chr1:43865846(+) A-I      intronic chr1:43864601(+) A-I      intronic chr1:43864503(+) A-I      intronic chr1:43903704(+) A-I      ncRNA chr1:43870951(+) A-I      intronic chr1:43866705(+) A-I      intronic chr1:43856865(+) A-I      intronic chr1:43864672(+) A-I      intronic chr1:43860429(+) A-I      intronic chr1:43903662(+) A-I      intronic chr1:43899438(+) A-I      intronic chr1:43861111(+) A-I      intronic chr1:43876105(+) A-I      3'UTR chr1:43903669(+) A-I      intronic chr1:43904011(+) A-I      intronic chr1:43862875(+) A-I      intronic chr1:43863462(+) A-I      intronic chr1:43904033(+) A-I      intronic chr1:43872004(+) A-I      3'UTR chr1:43875962(+) A-I      3'UTR chr1:43865873(+) A-I      intronic chr1:43869767(+) A-I      intronic chr1:43865394(+) A-I      intronic chr1:43903659(+) A-I      intronic chr1:43876021(+) A-I      3'UTR chr1:43860385(+) A-I      intronic chr1:43875969(+) A-I      3'UTR chr1:43863023(+) A-I      intronic chr1:43856800(+) A-I      intronic chr1:43903665(+) A-I      intronic chr1:43865743(+) A-I      intronic chr1:43875974(+) A-I      3'UTR chr1:43856821(+) A-I      intronic chr1:43863298(+) A-I      intronic chr1:43861082(+) A-I      intronic chr1:43860295(+) A-I      intronic chr1:43875946(+) A-I      3'UTR chr1:43862942(+) A-I      intronic chr1:43865736(+) A-I      intronic chr1:43866616(+) A-I      intronic chr1:43860469(+) A-I      intronic chr1:43862839(+) A-I      intronic chr1:43856940(+) A-I      intronic chr1:43863005(+) A-I      intronic chr1:43875968(+) A-I      3'UTR chr1:43862947(+) A-I      intronic chr1:43862948(+) A-I      intronic chr1:43875977(+) A-I      3'UTR chr1:43904085(+) A-I      intronic chr1:43869865(+) A-I      intronic chr1:43876036(+) A-I      3'UTR chr1:43871898(+) A-I      intronic chr1:43875990(+) A-I      3'UTR chr1:43865339(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SZT2	chr1:43904033(+) A-I intron -    22327324 chr1:43873011(+) A-I intron -    22327324 chr1:43883634(+) A-I intron -    22327324 chr1:43864498(+) A-I intron -    22028664 chr1:43864528(+) A-I intron -    22028664 chr1:43864533(+) A-I intron -    22028664 chr1:43864535(+) A-I intron -    22028664 chr1:43864536(+) A-I intron -    22028664 chr1:43864541(+) A-I intron -    22028664 chr1:43864555(+) A-I intron -    22028664 chr1:43864564(+) A-I intron -    22028664 chr1:43864620(+) A-I intron -    22028664 chr1:43864630(+) A-I intron -    22028664 chr1:43864636(+) A-I intron -    22028664 chr1:43864640(+) A-I intron -    22028664 chr1:43864644(+) A-I intron -    22028664 chr1:43864647(+) A-I intron -    22028664 chr1:43864685(+) A-I intron -    22028664 chr1:43864686(+) A-I intron -    22028664 chr1:43864692(+) A-I intron -    22028664 chr1:43864696(+) A-I intron -    22028664 chr1:43864701(+) A-I intron -    22028664 chr1:43864714(+) A-I intron -    22028664 chr1:43864726(+) A-I intron -    22028664 chr1:43864733(+) A-I intron -    22028664 chr1:43878066(+) A-I intron -    21960545 chr1:43878167(+) A-I intron -    21960545 chr1:43875995(+) A-G intron -    21725310 chr1:43883634(+) A-G intron -    22484847 chr1:43903659(+) A-G intron -    22484847 chr1:43903662(+) A-G intron -    22484847 chr1:43860429(+) A-G intron -    22484847 chr1:43860438(+) A-G intron -    22484847 chr1:43860469(+) A-G intron -    22484847 chr1:43862839(+) A-G intron -    22484847 chr1:43862875(+) A-G intron -    22484847 chr1:43862936(+) G-A intron -    22484847 chr1:43862987(+) A-G intron -    22484847 chr1:43863005(+) A-G intron -    22484847 chr1:43863299(+) A-G intron -    22484847 chr1:43863462(+) A-G intron -    22484847 chr1:43864503(+) A-G intron -    22484847 chr1:43865339(+) A-G intron -    22484847 chr1:43865394(+) A-G intron -    22484847 chr1:43865736(+) A-G intron -    22484847 chr1:43865743(+) A-G intron -    22484847 chr1:43870951(+) A-G intron -    22484847 chr1:43872937(+) A-G intron -    22484847 chr1:43872946(+) A-G intron -    22484847 chr1:43872966(+) A-G intron -    22484847 chr1:43873011(+) A-G intron -    22484847 chr1:43873012(+) A-G intron -    22484847 chr1:43873013(+) A-G intron -    22484847 chr1:43873067(+) A-G intron -    22484847 chr1:43873097(+) A-G intron -    22484847 chr1:43873099(+) A-G intron -    22484847 chr1:43873137(+) A-G intron -    22484847 chr1:43873243(+) A-G intron -    22484847 chr1:43873629(+) G-A intron -    22484847 chr1:43874004(+) A-G intron -    22484847 chr1:43874051(+) A-G intron -    22484847 chr1:43874073(+) A-G intron -    22484847 chr1:43874171(+) A-G intron -    22484847 chr1:43874172(+) A-G intron -    22484847 chr1:43874189(+) A-G intron -    22484847 chr1:43875946(+) A-G intron -    22484847 chr1:43877589(+) A-G intron -    22484847 chr1:43877634(+) A-G intron -    22484847 chr1:43878066(+) A-G intron -    22484847 chr1:43878084(+) A-G intron -    22484847 chr1:43878130(+) A-G intron -    22484847 chr1:43878167(+) A-G intron -    22484847 chr1:43878204(+) A-G intron -    22484847 chr1:43878231(+) A-G intron -    22484847 chr1:43878889(+) A-G intron -    22484847 chr1:43878892(+) A-G intron -    22484847 chr1:43878901(+) A-G intron -    22484847 chr1:43878933(+) A-G intron -    22484847 chr1:43878975(+) T-C intron -    22484847 chr1:43879901(+) A-G intron -    22484847 chr1:43899174(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SZT2	chr1:43855599-43855600(+) m6A 5'UTR//exon       24981863 chr1:43868854-43868855(+) m1A CDS//exon       26863196 chr1:43875598-43875599(+) m6A 3'UTR//exon//intron       24284625 chr1:43875608-43875609(+) m6A 3'UTR//exon//intron       24284625 chr1:43875639-43875640(+) m6A 3'UTR//exon//intron       24284625 chr1:43875648-43875649(+) m6A 3'UTR//exon//intron       24284625 chr1:43875706-43875707(+) m6A 3'UTR//exon//intron       24981863//22608085 chr1:43875728-43875729(+) m6A 3'UTR//exon//intron       24981863//22608085 chr1:43875740-43875741(+) m6A 3'UTR//exon//intron       24981863//22608085 chr1:43875749-43875750(+) m6A 3'UTR//exon//intron       24981863//22608085 chr1:43875761-43875762(+) m6A 3'UTR//exon//intron       24981863//22608085 chr1:43875787-43875788(+) m6A 3'UTR//exon//intron       24981863//22608085 chr1:43875811-43875812(+) m6A 3'UTR//exon//intron       24981863//22608085 chr1:43875829-43875830(+) m6A 3'UTR//exon//intron       24981863//22608085 chr1:43875859-43875860(+) m6A 3'UTR//exon//intron       24981863//22608085 chr1:43875887-43875888(+) m6A 3'UTR//exon//intron       22608085 chr1:43875892-43875893(+) m6A 3'UTR//exon//intron       22608085 chr1:43876736-43876737(+) Gm intron       - chr1:43886459-43886460(+) m6A CDS//exon       - chr1:43905599-43905600(+) m6A CDS       - chr1:43905627-43905628(+) m6A CDS       - chr1:43905707-43905708(+) m6A CDS       - chr1:43912665-43912666(+) m6A CDS//exon       - chr1:43912807-43912808(+) m6A CDS//exon       - chr1:43913217-43913218(+) m6A CDS//exon       - chr1:43913914-43913915(+) m6A CDS//exon       - chr1:43915822-43915823(+) m6A CDS//exon       24284625//24209618 chr1:43916053-43916054(+) m6A CDS//exon       24284625//24209618 chr1:43916136-43916137(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:43916159-43916160(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:43916164-43916165(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:43916224-43916225(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:43916259-43916260(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:43916327-43916328(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:43916341-43916342(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:43916368-43916369(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:43916396-43916397(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:43916469-43916470(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr1:43916570-43916571(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:43916583-43916584(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:43916610-43916611(+) Y 3'UTR//exon       26075521 chr1:43916670-43916671(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:43916771-43916772(+) m6A 3'UTR//exon       24284625//24209618//24981863//22608085 chr1:43916784-43916785(+) m6A 3'UTR//exon       24284625//24209618//24981863//22608085 chr1:43916815-43916816(+) m6A 3'UTR//exon       24284625//24209618//24981863 chr1:43917027-43917028(+) m6A 3'UTR//exon       27773535 chr1:43917140-43917141(+) m6A 3'UTR//exon       - chr1:43917193-43917194(+) m6A 3'UTR//exon       24981863 chr1:43917221-43917222(+) m6A 3'UTR//exon       24209618//24981863 chr1:43917231-43917232(+) m6A 3'UTR//exon       24209618//24981863 chr1:43917269-43917270(+) m6A 3'UTR//exon       24209618//24981863 chr1:43917333-43917334(+) m6A 3'UTR//exon       24981863 chr1:43917541-43917542(+) m6A 3'UTR//exon       27773535 chr1:43917575-43917576(+) m6A 3'UTR//exon       24981863//27773535 chr1:43917587-43917588(+) m6A 3'UTR//exon       24981863//27773535 chr1:43917840-43917841(+) m6A 3'UTR//exon       27773535 chr1:43917885-43917886(+) m6A 3'UTR//exon       27773535 chr1:43918005-43918006(+) m6A 3'UTR//exon       27773535//27371828//27773536 chr1:43918143-43918144(+) m6A 3'UTR//exon       24284625//27773535//27371828 chr1:43918181-43918182(+) m6A 3'UTR//exon       24284625//27773535 chr1:43918228-43918229(+) m6A 3'UTR//exon       24284625//24981863//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SZT2	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H11-5p
Interactor2: SZT2

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg