Basic Information:

  VIRBase ID:  

VHID00177994

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H11-5p:  MIMAT0014697          LMO4:  NM_006769     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H11-5p	LMO4
miRBase Accession/Entrez ID	MIMAT0014697	8543
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LMO4	chr1:87794558-87794559(+) m6A 5'UTR       24209618//25456834//24981863 chr1:87794673-87794674(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:87794679-87794680(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:87794809-87794810(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863 chr1:87796914-87796915(+) m6A exon//intron       - chr1:87797481-87797482(+) m6A 5'UTR//exon//intron       24981863 chr1:87797501-87797502(+) m6A exon//intron       24981863 chr1:87805877-87805878(+) m6A CDS//exon       24284625 chr1:87810556-87810557(+) m6A 3'UTR//exon       24284625//24209618//27773535//22608085 chr1:87810665-87810666(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:87810674-87810675(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:87810683-87810684(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:87810700-87810701(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:87810734-87810735(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:87811210-87811211(+) m6A 3'UTR       24981863//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LMO4	Cytosol K562 cells     - Exosome Blood     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H11-5p
Interactor2: LMO4

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg