Detail Information

Basic Information:


  VIRBase ID:  

VHID00177486

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H10:           CC2D1B:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H10 CC2D1B
miRBase
Accession/Entrez ID		 MIMAT0014353 200014
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - Lgd1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CC2D1B
chr1:52816588(-) A-I      3'UTR
chr1:52817424(-) A-I      3'UTR
chr1:52816613(-) A-I      3'UTR
chr1:52816595(-) A-I      3'UTR
chr1:52816632(-) A-I      3'UTR
chr1:52829416(-) A-I      intronic
chr1:52829020(-) A-I      intronic
chr1:52828967(-) A-I      intronic
chr1:52829526(-) A-I      intronic
chr1:52829451(-) A-I      intronic
chr1:52829420(-) A-I      intronic
chr1:52816478(-) A-I      3'UTR
chr1:52817550(-) A-I      3'UTR
chr1:52816455(-) A-I      3'UTR
chr1:52816620(-) A-I      3'UTR
chr1:52816675(-) A-I      3'UTR
chr1:52817328(-) A-I      3'UTR
chr1:52817407(-) A-I      3'UTR
chr1:52817554(-) A-I      3'UTR
chr1:52817373(-) A-I      3'UTR
chr1:52817552(-) A-I      3'UTR
chr1:52816510(-) A-I      3'UTR
chr1:52816665(-) A-I      3'UTR
chr1:52817393(-) A-I      3'UTR
chr1:52816622(-) A-I      3'UTR
chr1:52817314(-) A-I      3'UTR
chr1:52816451(-) A-I      3'UTR
chr1:52817292(-) A-I      3'UTR
chr1:52817456(-) A-I      3'UTR
chr1:52816674(-) A-I      3'UTR
chr1:52816523(-) A-I      3'UTR
chr1:52816642(-) A-I      3'UTR
chr1:52816582(-) A-I      3'UTR
chr1:52817428(-) A-I      3'UTR
chr1:52816614(-) A-I      3'UTR
chr1:52816591(-) A-I      3'UTR
chr1:52817434(-) A-I      3'UTR
chr1:52816700(-) A-I      3'UTR
chr1:52816592(-) A-I      3'UTR
chr1:52816638(-) A-I      3'UTR
chr1:52817376(-) A-I      3'UTR
chr1:52817534(-) A-I      3'UTR
chr1:52816708(-) A-I      3'UTR
chr1:52828877(-) A-I      intronic
chr1:52816637(-) A-I      3'UTR
chr1:52817447(-) A-I      3'UTR
chr1:52817504(-) A-I      3'UTR
chr1:52817473(-) A-I      3'UTR
chr1:52817332(-) A-I      3'UTR
chr1:52817313(-) A-I      3'UTR
chr1:52817444(-) A-I      3'UTR
chr1:52817301(-) A-I      3'UTR
chr1:52817390(-) A-I      3'UTR
chr1:52816555(-) A-I      3'UTR
chr1:52817487(-) A-I      3'UTR
chr1:52817408(-) A-I      3'UTR
chr1:52816506(-) A-I      3'UTR
chr1:52816470(-) A-I      3'UTR
chr1:52816612(-) A-I      3'UTR
chr1:52816623(-) A-I      3'UTR
chr1:52817399(-) A-I      3'UTR
chr1:52816597(-) A-I      3'UTR
chr1:52817432(-) A-I      3'UTR
chr1:52816515(-) A-I      3'UTR
chr1:52830491(-) A-I      intronic
chr1:52816598(-) A-I      3'UTR
chr1:52816692(-) A-I      3'UTR
chr1:52816596(-) A-I      3'UTR
chr1:52816646(-) A-I      3'UTR
chr1:52817323(-) A-I      3'UTR
chr1:52816585(-) A-I      3'UTR
chr1:52817493(-) A-I      3'UTR
chr1:52816546(-) A-I      3'UTR
chr1:52817364(-) A-I      3'UTR
chr1:52816556(-) A-I      3'UTR
chr1:52817480(-) A-I      3'UTR
chr1:52816503(-) A-I      3'UTR
chr1:52816691(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CC2D1B
chr1:52816470(-) A-I exon 3'UTR    15342557
chr1:52816503(-) A-I exon 3'UTR    15342557
chr1:52816510(-) A-I exon 3'UTR    15342557
chr1:52816555(-) A-I exon 3'UTR    15342557
chr1:52816556(-) A-I exon 3'UTR    15342557
chr1:52816591(-) A-I exon 3'UTR    15342557   //22327324
chr1:52816592(-) A-I exon 3'UTR    15342557
chr1:52816612(-) A-I exon 3'UTR    15342557
chr1:52816622(-) A-I exon 3'UTR    15342557
chr1:52816623(-) A-I exon 3'UTR    15342557
chr1:52816637(-) A-I exon 3'UTR    15342557
chr1:52816638(-) A-I exon 3'UTR    15342557
chr1:52816646(-) A-I exon 3'UTR    15342557
chr1:52816674(-) A-I exon 3'UTR    15342557
chr1:52817323(-) A-I exon 3'UTR    15342557
chr1:52817364(-) A-I exon 3'UTR    15342557
chr1:52817376(-) A-I exon 3'UTR    15342557
chr1:52817390(-) A-I exon 3'UTR    15342557
chr1:52817393(-) A-I exon 3'UTR    15342557
chr1:52817399(-) A-I exon 3'UTR    15342557
chr1:52817408(-) A-I exon 3'UTR    15342557   //15258596
chr1:52817428(-) A-I exon 3'UTR    15342557   //15258596
chr1:52817434(-) A-I exon 3'UTR    15342557   //15258596   //22327324
chr1:52817447(-) A-I exon 3'UTR    15342557
chr1:52817473(-) A-I exon 3'UTR    15342557
chr1:52817480(-) A-I exon 3'UTR    15342557
chr1:52817487(-) A-I exon 3'UTR    15342557
chr1:52817493(-) A-I exon 3'UTR    15342557
chr1:52817504(-) A-I exon 3'UTR    15342557
chr1:52817534(-) A-I exon 3'UTR    15342557   //15258596   //21960545
chr1:52816582(-) A-I exon 3'UTR    22327324
chr1:52816506(-) A-G exon 3'UTR    22484847
chr1:52816510(-) A-G exon 3'UTR    22484847
chr1:52816556(-) A-G exon 3'UTR    22484847
chr1:52816582(-) A-G exon 3'UTR    22484847
chr1:52816585(-) A-G exon 3'UTR    22484847
chr1:52816591(-) A-G exon 3'UTR    22484847
chr1:52816612(-) A-G exon 3'UTR    22484847
chr1:52816622(-) A-G exon 3'UTR    22484847
chr1:52816638(-) A-G exon 3'UTR    22484847
chr1:52816642(-) A-G exon 3'UTR    22484847
chr1:52816691(-) A-G exon 3'UTR    22484847
chr1:52817373(-) A-G exon 3'UTR    22484847
chr1:52817376(-) A-G exon 3'UTR    22484847
chr1:52817390(-) A-G exon 3'UTR    22484847
chr1:52817393(-) A-G exon 3'UTR    22484847
chr1:52817399(-) A-G exon 3'UTR    22484847
chr1:52817419(-) T-C exon 3'UTR    22484847
chr1:52817428(-) A-G exon 3'UTR    22484847
chr1:52817434(-) A-G exon 3'UTR    22484847
chr1:52817436(-) T-C exon 3'UTR    22484847
chr1:52817473(-) A-G exon 3'UTR    22484847
chr1:52817480(-) A-G exon 3'UTR    22484847
chr1:52817534(-) A-G exon 3'UTR    22484847
chr1:52828877(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CC2D1B
chr1:52816287-52816288(-) m6A 3'UTR//intron       24981863
chr1:52816408-52816409(-) m6A 3'UTR//intron       27773535
chr1:52816431-52816432(-) m6A 3'UTR//intron       27773535
chr1:52816444-52816445(-) m6A 3'UTR//intron       27773535
chr1:52818201-52818202(-) m6A 3'UTR//intron       24981863//27773535
chr1:52818245-52818246(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//27371828//22608085
chr1:52818340-52818341(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr1:52818416-52818417(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:52818482-52818483(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:52818500-52818501(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:52818635-52818636(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22608085
chr1:52818703-52818704(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//27371828
chr1:52818777-52818778(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//27371828
chr1:52818926-52818927(-) m6A 3'UTR//exon//intron       24284625
chr1:52819221-52819222(-) m6A CDS//exon//intron       27371828
chr1:52820053-52820054(-) m6A exon//intron       25456834//24981863//27371828
chr1:52820086-52820087(-) m6A exon//intron       25456834//24981863//27371828
chr1:52820574-52820575(-) m6A CDS//exon       27773535
chr1:52820586-52820587(-) m6A CDS//exon       27773535
chr1:52820591-52820592(-) m6A CDS//exon       27773535
chr1:52821077-52821078(-) m6A CDS//exon       27773535
chr1:52821083-52821084(-) m6A CDS//exon       27773535
chr1:52821099-52821100(-) m6A CDS//exon       27773535
chr1:52821119-52821120(-) m6A CDS//exon       27773535
chr1:52821459-52821460(-) m6A CDS//exon       27371828
chr1:52821503-52821504(-) m6A CDS//exon       27371828
chr1:52821864-52821865(-) m6A CDS//exon       27371828
chr1:52821873-52821874(-) m6A CDS//exon       27371828
chr1:52821943-52821944(-) m6A CDS//exon       27773535//27773536
chr1:52821953-52821954(-) m6A CDS//exon       27773535//27773536
chr1:52822062-52822063(-) m6A CDS//exon       27773535
chr1:52823335-52823336(-) m6A CDS//exon       24284625
chr1:52823534-52823535(-) m6A CDS//exon       24284625
chr1:52823606-52823607(-) m6A exon//intron       24284625
chr1:52823645-52823646(-) m6A exon//intron       24284625
chr1:52824050-52824051(-) m6A CDS//exon       27773536
chr1:52824777-52824778(-) m6A CDS//exon       27773536
chr1:52824808-52824809(-) m6A CDS//exon       27773536
chr1:52825407-52825408(-) m6A CDS//exon       24284625//27371828
chr1:52825485-52825486(-) m6A CDS//exon       24284625//27371828//27773536
chr1:52825491-52825492(-) m6A CDS//exon       24284625//27371828//27773536
chr1:52825497-52825498(-) m6A CDS//exon//intron       24284625//27371828//27773536
chr1:52825534-52825535(-) m6A CDS//exon//intron       24284625//27773535//27371828//27773536
chr1:52825778-52825779(-) m6A CDS//exon       24284625//27773535//27371828//27773536
chr1:52825800-52825801(-) m6A CDS//exon       24284625//27773535//27371828//27773536
chr1:52826494-52826495(-) m6A exon//intron       27773536
chr1:52826508-52826509(-) m6A exon//intron       27773536
chr1:52826538-52826539(-) m6A exon//intron       27773536
chr1:52826680-52826681(-) m6A CDS//exon       24284625//24209618//27773535//27371828
chr1:52826693-52826694(-) m6A CDS//exon       24284625//24209618//27773535//27371828
chr1:52826700-52826701(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828
chr1:52826767-52826768(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536
chr1:52827248-52827249(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536
chr1:52828306-52828307(-) m6A CDS//exon       24284625//24209618//27773535//27371828//27773536
chr1:52828347-52828348(-) m6A CDS//exon       24284625//24209618//27773535//27371828//27773536
chr1:52828386-52828387(-) m6A CDS//exon       24284625//24209618//27773535//27371828//27773536
chr1:52830274-52830275(-) m6A CDS//exon       24284625//27773535//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsv2-miR-H10
Exosome K562 cells     24460325
CC2D1B
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H10
Interactor2: CC2D1B

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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