Detail Information

Basic Information:


  VIRBase ID:  

VHID00177147

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H10:           ZNF554:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H10 ZNF554
miRBase
Accession/Entrez ID		 MIMAT0014353 115196
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZNF554
chr19:2829460(+) A-I      intronic
chr19:2829289(+) A-I      intronic
chr19:2835126(+) A-I      3'UTR
chr19:2835109(+) A-I      3'UTR
chr19:2830144(+) A-I      intronic
chr19:2825992(+) A-I      intronic
chr19:2830193(+) A-I      intronic
chr19:2829515(+) A-I      intronic
chr19:2829449(+) A-I      intronic
chr19:2829170(+) A-I      intronic
chr19:2828643(+) A-I      intronic
chr19:2828633(+) A-I      intronic
chr19:2826922(+) A-I      intronic
chr19:2826679(+) A-I      intronic
chr19:2822142(+) A-I      intronic
chr19:2835355(+) A-I      3'UTR
chr19:2835583(+) A-I      3'UTR
chr19:2835542(+) A-I      3'UTR
chr19:2835420(+) A-I      3'UTR
chr19:2835411(+) A-I      3'UTR
chr19:2835391(+) A-I      3'UTR
chr19:2835359(+) A-I      3'UTR
chr19:2835363(+) A-I      3'UTR
chr19:2835356(+) A-I      3'UTR
chr19:2835215(+) A-I      3'UTR
chr19:2835076(+) A-I      3'UTR
chr19:2835096(+) A-I      3'UTR
chr19:2836074(+) A-I      3'UTR
chr19:2835376(+) A-I      3'UTR
chr19:2835293(+) A-I      3'UTR
chr19:2836073(+) A-I      3'UTR
chr19:2835926(+) A-I      3'UTR
chr19:2835313(+) A-I      3'UTR
chr19:2835323(+) A-I      3'UTR
chr19:2835320(+) A-I      3'UTR
chr19:2835854(+) A-I      3'UTR
chr19:2829102(+) A-I      intronic
chr19:2828660(+) A-I      intronic
chr19:2821149(+) A-I      intronic
chr19:2830064(+) A-I      intronic
chr19:2828554(+) A-I      intronic
chr19:2828544(+) A-I      intronic
chr19:2822751(+) A-I      intronic
chr19:2829579(+) A-I      intronic
chr19:2822781(+) A-I      intronic
chr19:2828571(+) A-I      intronic
chr19:2828511(+) A-I      intronic
chr19:2835580(+) A-I      3'UTR
chr19:2836353(+) A-I      3'UTR
chr19:2835931(+) A-I      3'UTR
chr19:2826793(+) A-I      intronic
chr19:2825614(+) A-I      intronic
chr19:2829580(+) A-I      intronic
chr19:2835083(+) A-I      3'UTR
chr19:2835586(+) A-I      3'UTR
chr19:2822693(+) A-I      intronic
chr19:2836095(+) A-I      3'UTR
chr19:2835507(+) A-I      3'UTR
chr19:2835036(+) A-I      3'UTR
chr19:2822649(+) A-I      intronic
chr19:2826028(+) A-I      intronic
chr19:2828623(+) A-I      intronic
chr19:2835216(+) A-I      3'UTR
chr19:2826100(+) A-I      intronic
chr19:2830207(+) A-I      intronic
chr19:2830694(+) A-I      intronic
chr19:2835349(+) A-I      3'UTR
chr19:2835213(+) A-I      3'UTR
chr19:2831026(+) A-I      intronic
chr19:2829179(+) A-I      intronic
chr19:2836055(+) A-I      3'UTR
chr19:2835114(+) A-I      3'UTR
chr19:2822792(+) A-I      intronic
chr19:2835222(+) A-I      3'UTR
chr19:2835872(+) A-I      3'UTR
chr19:2836035(+) A-I      3'UTR
chr19:2835568(+) A-I      3'UTR
chr19:2836069(+) A-I      3'UTR
chr19:2830945(+) A-I      intronic
chr19:2836018(+) A-I      3'UTR
chr19:2835097(+) A-I      3'UTR
chr19:2830115(+) A-I      intronic
chr19:2836082(+) A-I      3'UTR
chr19:2835939(+) A-I      3'UTR
chr19:2831025(+) A-I      intronic
chr19:2826385(+) A-I      intronic
chr19:2835866(+) A-I      3'UTR
chr19:2821251(+) A-I      intronic
chr19:2822697(+) A-I      intronic
chr19:2836056(+) A-I      3'UTR
chr19:2830947(+) A-I      intronic
chr19:2836057(+) A-I      3'UTR
chr19:2835987(+) A-I      3'UTR
chr19:2836109(+) A-I      3'UTR
chr19:2829450(+) A-I      intronic
chr19:2835944(+) A-I      3'UTR
chr19:2835004(+) A-I      3'UTR
chr19:2830132(+) A-I      intronic
chr19:2836096(+) A-I      3'UTR
chr19:2826382(+) A-I      intronic
chr19:2829459(+) A-I      intronic
chr19:2831344(+) A-I      intronic
chr19:2829237(+) A-I      intronic
chr19:2829178(+) A-I      intronic
chr19:2830062(+) A-I      intronic
chr19:2829614(+) A-I      intronic
chr19:2829192(+) A-I      intronic
chr19:2830118(+) A-I      intronic
chr19:2829101(+) A-I      intronic
chr19:2829623(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZNF554
chr19:2835004(+) A-I exon 3'UTR    15258596
chr19:2835083(+) A-I exon 3'UTR    15258596
chr19:2835130(+) A-I exon 3'UTR    15258596
chr19:2835213(+) A-I exon 3'UTR    15258596
chr19:2835216(+) A-I exon 3'UTR    15258596
chr19:2835222(+) A-I exon 3'UTR    15258596
chr19:2835229(+) A-I exon 3'UTR    15258596
chr19:2835349(+) A-I exon 3'UTR    15258596
chr19:2835130(+) A-G intron -    21725310

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZNF554
chr19:2826337-2826338(+) m6A 3'UTR//intron       -
chr19:2827645-2827646(+) m6A 3'UTR//CDS       -
chr19:2827690-2827691(+) m6A 3'UTR//CDS       -
chr19:2827717-2827718(+) m6A 3'UTR//CDS       -
chr19:2833699-2833700(+) m6A 3'UTR//CDS//exon       24981863//22608085
chr19:2833705-2833706(+) m6A 3'UTR//CDS//exon       24981863//22608085
chr19:2833739-2833740(+) m6A 3'UTR//CDS//exon       24981863//22608085
chr19:2833804-2833805(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22608085
chr19:2833816-2833817(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22608085
chr19:2833957-2833958(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22608085
chr19:2834014-2834015(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22608085
chr19:2834045-2834046(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22608085
chr19:2834086-2834087(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22608085
chr19:2834149-2834150(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22608085
chr19:2834198-2834199(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22608085
chr19:2834255-2834256(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22608085
chr19:2834282-2834283(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22608085
chr19:2834349-2834350(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22608085
chr19:2834467-2834468(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22608085
chr19:2834517-2834518(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22608085
chr19:2834601-2834602(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22608085
chr19:2834617-2834618(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22608085
chr19:2834685-2834686(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22608085
chr19:2834702-2834703(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22608085
chr19:2834769-2834770(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22608085
chr19:2834787-2834788(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22608085
chr19:2834827-2834828(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22608085
chr19:2835661-2835662(+) m6A 3'UTR//exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsv2-miR-H10
Exosome K562 cells     24460325
ZNF554
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol K562 cells     -
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H10
Interactor2: ZNF554

Evidence Support:


Prediction-Evidence cRep//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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