Detail Information

Basic Information:


  VIRBase ID:  

VHID00177048

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H10:           R3HDM4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H10 R3HDM4
miRBase
Accession/Entrez ID		 MIMAT0014353 91300
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - C19orf22

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR R3HDM4
chr19:906197(-) A-I      intronic
chr19:906192(-) A-I      intronic
chr19:906193(-) A-I      intronic
chr19:906200(-) A-I      intronic
chr19:911400(-) A-I      intronic
chr19:911332(-) A-I      intronic
chr19:911232(-) A-I      intronic
chr19:911227(-) A-I      intronic
chr19:911201(-) A-I      intronic
chr19:910242(-) A-I      intronic
chr19:910181(-) A-I      intronic
chr19:910176(-) A-I      intronic
chr19:910082(-) A-I      intronic
chr19:909733(-) A-I      intronic
chr19:909709(-) A-I      intronic
chr19:909639(-) A-I      intronic
chr19:909638(-) A-I      intronic
chr19:909630(-) A-I      intronic
chr19:909613(-) A-I      intronic
chr19:909551(-) A-I      intronic
chr19:908498(-) A-I      intronic
chr19:908486(-) A-I      intronic
chr19:908445(-) A-I      intronic
chr19:908442(-) A-I      intronic
chr19:905348(-) A-I      intronic
chr19:905305(-) A-I      intronic
chr19:905239(-) A-I      intronic
chr19:905132(-) A-I      intronic
chr19:905122(-) A-I      intronic
chr19:905086(-) A-I      intronic
chr19:905041(-) A-I      intronic
chr19:905024(-) A-I      intronic
chr19:904990(-) A-I      intronic
chr19:904962(-) A-I      intronic
chr19:911189(-) A-I      intronic
chr19:906400(-) A-I      intronic
chr19:906838(-) A-I      intronic
chr19:906944(-) A-I      intronic
chr19:906954(-) A-I      intronic
chr19:906956(-) A-I      intronic
chr19:906987(-) A-I      intronic
chr19:906998(-) A-I      intronic
chr19:907042(-) A-I      intronic
chr19:908427(-) A-I      intronic
chr19:904948(-) A-I      intronic
chr19:903794(-) A-I      intronic
chr19:902896(-) A-I      intronic
chr19:902766(-) A-I      intronic
chr19:902758(-) A-I      intronic
chr19:902746(-) A-I      intronic
chr19:904981(-) A-I      intronic
chr19:904714(-) A-I      intronic
chr19:904577(-) A-I      intronic
chr19:903886(-) A-I      intronic
chr19:905448(-) A-I      intronic
chr19:905602(-) A-I      intronic
chr19:905603(-) A-I      intronic
chr19:906085(-) A-I      intronic
chr19:906358(-) A-I      intronic
chr19:906388(-) A-I      intronic
chr19:906391(-) A-I      intronic
chr19:906394(-) A-I      intronic
chr19:905419(-) A-I      intronic
chr19:904689(-) A-I      intronic
chr19:906403(-) A-I      intronic
chr19:906194(-) A-I      intronic
chr19:906296(-) A-I      intronic
chr19:904775(-) A-I      intronic
chr19:902936(-) A-I      intronic
chr19:905259(-) A-I      intronic
chr19:910468(-) A-I      intronic
chr19:905423(-) A-I      intronic
chr19:906207(-) A-I      intronic
chr19:904007(-) A-I      intronic
chr19:911425(-) A-I      intronic
chr19:904575(-) A-I      intronic
chr19:907088(-) A-I      intronic
chr19:906948(-) A-I      intronic
chr19:905405(-) A-I      intronic
chr19:906416(-) A-I      intronic
chr19:902935(-) A-I      intronic
chr19:905342(-) A-I      intronic
chr19:905096(-) A-I      intronic
chr19:907010(-) A-I      intronic
chr19:905422(-) A-I      intronic
chr19:909713(-) A-I      intronic
chr19:910368(-) A-I      intronic
chr19:910141(-) A-I      intronic
chr19:904664(-) A-I      intronic
chr19:906491(-) A-I      intronic
chr19:906316(-) A-I      intronic
chr19:903988(-) A-I      intronic
chr19:906233(-) A-I      intronic
chr19:905314(-) A-I      intronic
chr19:906490(-) A-I      intronic
chr19:910599(-) A-I      intronic
chr19:906986(-) A-I      intronic
chr19:903861(-) A-I      intronic
chr19:903792(-) A-I      intronic
chr19:904977(-) A-I      intronic
chr19:907033(-) A-I      intronic
chr19:906196(-) A-I      intronic
chr19:906892(-) A-I      intronic
chr19:904693(-) A-I      intronic
chr19:907019(-) A-I      intronic
chr19:906853(-) A-I      intronic
chr19:906229(-) A-I      intronic
chr19:906157(-) A-I      intronic
chr19:907096(-) A-I      intronic
chr19:905461(-) A-I      intronic
chr19:902353(-) A-I      intronic
chr19:903660(-) A-I      intronic
chr19:903781(-) A-I      intronic
chr19:906913(-) A-I      intronic
chr19:904651(-) A-I      intronic
chr19:906421(-) A-I      intronic
chr19:906909(-) A-I      intronic
chr19:907101(-) A-I      intronic
chr19:903927(-) A-I      intronic
chr19:906153(-) A-I      intronic
chr19:905247(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED R3HDM4
chr19:904575(-) A-G intron -    22484847
chr19:904977(-) A-G intron -    22484847
chr19:906913(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase R3HDM4
chr19:896729-896730(-) m6A 3'UTR       24284625//24981863//27773535
chr19:896871-896872(-) m6A 3'UTR       27773535
chr19:896878-896879(-) m6A 3'UTR       27773535
chr19:896939-896940(-) m6A 3'UTR       27773535
chr19:897191-897192(-) m6A 3'UTR       24981863//22575960
chr19:897211-897212(-) m6A 3'UTR       24981863//22575960
chr19:899453-899454(-) m6A 3'UTR//CDS//exon       24284625//27371828//27773536
chr19:899606-899607(-) m6A 3'UTR//CDS//exon       24284625//27371828//27773536
chr19:899673-899674(-) m6A 3'UTR//CDS//exon       27371828//27773536
chr19:900142-900143(-) m6A 3'UTR//CDS//exon       24209618//27773535//27371828//27773536
chr19:900839-900840(-) m6A 3'UTR//CDS//exon       24209618//27773535//27371828//27773536
chr19:900932-900933(-) m6A 3'UTR//CDS//exon       24209618//27773535//27371828//27773536
chr19:901485-901486(-) m6A 3'UTR//CDS//exon//intron       27773536
chr19:901519-901520(-) m6A 3'UTR//CDS//exon//intron       27773536
chr19:901672-901673(-) m6A exon//intron       27773536
chr19:901977-901978(-) m6A 3'UTR//CDS//exon       27773536
chr19:902025-902026(-) m6A 3'UTR//CDS//exon       27773536
chr19:902031-902032(-) m6A 3'UTR//CDS//exon       27773536
chr19:902060-902061(-) m6A 3'UTR//CDS//exon       27773536
chr19:902081-902082(-) m6A 3'UTR//CDS//exon//intron       27773536
chr19:902152-902153(-) m6A 3'UTR//intron       27773536
chr19:902216-902217(-) m6A 3'UTR//intron       24209618//27773536
chr19:902404-902405(-) m6A 3'UTR//exon//intron       24209618
chr19:902524-902525(-) m6A 3'UTR//intron       24209618
chr19:902565-902566(-) m6A CDS//intron       24209618
chr19:913140-913141(-) m6A CDS//exon       24209618//24981863//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsv2-miR-H10
Exosome K562 cells     24460325
R3HDM4
Chromatin K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H10
Interactor2: R3HDM4

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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