Basic Information:

  VIRBase ID:  

VHID00176257

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H10:  MIMAT0014353          CHST12:  NM_018641     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H10	CHST12
miRBase Accession/Entrez ID	MIMAT0014353	55501
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C4S-2//C4ST-2//C4ST2

RNA Editing:

Resource	Symbol	Editing Position
Lncediting	CHST12	chr7: 2487212     chr7: 2487208     chr7: 2487201     chr7: 2487188     chr7: 2487274     chr7: 2487260     chr7: 2487330     chr7: 2487127     chr7: 2487342     chr7: 2487308     chr7: 2487288     chr7: 2487369     chr7: 2487317     chr7: 2487172     chr7: 2487171     chr7: 2487169     chr7: 2487253     chr7: 2487370     chr7: 2487382     chr7: 2487131     chr7: 2487249     chr7: 2487343     chr7: 2487247     chr7: 2487237     chr7: 2487234     chr7: 2487225

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CHST12	chr7:2462431(+) A-I      intronic chr7:2459322(+) A-I      intronic chr7:2467552(+) A-I      intronic chr7:2459325(+) A-I      intronic chr7:2459689(+) A-I      intronic chr7:2459070(+) A-I      intronic chr7:2459743(+) A-I      intronic chr7:2462793(+) A-I      intronic chr7:2466372(+) A-I      intronic chr7:2461294(+) A-I      intronic chr7:2459815(+) A-I      intronic chr7:2467891(+) A-I      intronic chr7:2447330(+) A-I      intronic chr7:2455387(+) A-I      intronic chr7:2455384(+) A-I      intronic chr7:2455377(+) A-I      intronic chr7:2468979(+) A-I      intronic chr7:2467894(+) A-I      intronic chr7:2459222(+) A-I      intronic chr7:2462300(+) A-I      intronic chr7:2461306(+) A-I      intronic chr7:2461292(+) A-I      intronic chr7:2459068(+) A-I      intronic chr7:2461022(+) A-I      intronic chr7:2460762(+) A-I      intronic chr7:2458485(+) A-I      intronic chr7:2460263(+) A-I      intronic chr7:2460237(+) A-I      intronic chr7:2466636(+) A-I      intronic chr7:2458532(+) A-I      intronic chr7:2458672(+) A-I      intronic chr7:2458996(+) A-I      intronic chr7:2454814(+) A-I      intronic chr7:2454902(+) A-I      intronic chr7:2454819(+) A-I      intronic chr7:2454813(+) A-I      intronic chr7:2466575(+) A-I      intronic chr7:2474190(+) A-I      3'UTR chr7:2474131(+) A-I      3'UTR chr7:2474121(+) A-I      3'UTR chr7:2474171(+) A-I      3'UTR chr7:2460260(+) A-I      intronic chr7:2459302(+) A-I      intronic chr7:2461120(+) A-I      intronic chr7:2467930(+) A-I      intronic chr7:2462810(+) A-I      intronic chr7:2444870(+) A-I      intronic chr7:2462761(+) A-I      intronic chr7:2461214(+) A-I      intronic chr7:2449265(+) A-I      intronic chr7:2466464(+) A-I      intronic chr7:2462764(+) A-I      intronic chr7:2474201(+) A-I      3'UTR chr7:2474175(+) A-I      3'UTR chr7:2474117(+) A-I      3'UTR chr7:2474152(+) A-I      3'UTR chr7:2474155(+) A-I      3'UTR chr7:2474191(+) A-I      3'UTR chr7:2447750(+) A-I      intronic chr7:2458894(+) A-I      intronic chr7:2467032(+) A-I      intronic chr7:2462797(+) A-I      intronic chr7:2462857(+) A-I      intronic chr7:2460580(+) A-I      intronic chr7:2449264(+) A-I      intronic chr7:2462288(+) A-I      intronic chr7:2447444(+) A-I      intronic chr7:2458897(+) A-I      intronic chr7:2449094(+) A-I      intronic chr7:2464751(+) A-I      intronic chr7:2444973(+) A-I      intronic chr7:2449614(+) A-I      intronic chr7:2459317(+) A-I      intronic chr7:2444841(+) A-I      intronic chr7:2462141(+) A-I      intronic chr7:2447394(+) A-I      intronic chr7:2447445(+) A-I      intronic chr7:2460241(+) A-I      intronic chr7:2462760(+) A-I      intronic chr7:2469497(+) A-I      intronic chr7:2455456(+) A-I      intronic chr7:2448995(+) A-I      intronic chr7:2460210(+) A-I      intronic chr7:2458788(+) A-I      intronic chr7:2458713(+) A-I      intronic chr7:2462746(+) A-I      intronic chr7:2467061(+) A-I      intronic chr7:2444994(+) A-I      intronic chr7:2449691(+) A-I      intronic chr7:2466722(+) A-I      intronic chr7:2467893(+) A-I      intronic chr7:2459156(+) A-I      intronic chr7:2460561(+) A-I      intronic chr7:2460797(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CHST12	chr7:2472309(+) T-G intron -    21725310 chr7:2447394(+) A-G intron -    22484847 chr7:2449265(+) A-G intron -    22484847 chr7:2450005(+) A-G intron -    22484847 chr7:2455278(+) C-T intron -    22484847 chr7:2455456(+) A-G intron -    22484847 chr7:2458501(+) A-G intron -    22484847 chr7:2459317(+) A-G intron -    22484847 chr7:2460210(+) A-G intron -    22484847 chr7:2460241(+) A-G intron -    22484847 chr7:2460260(+) A-G intron -    22484847 chr7:2461214(+) A-G intron -    22484847 chr7:2461983(+) G-A intron -    22484847 chr7:2462288(+) A-G intron -    22484847 chr7:2467061(+) A-G intron -    22484847 chr7:2467930(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CHST12	chr7:2472353-2472354(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr7:2472437-2472438(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr7:2472443-2472444(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr7:2472485-2472486(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr7:2472620-2472621(+) m6A CDS       24284625//24209618//25456834//24981863//27773536//22608085 chr7:2473199-2473200(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr7:2473303-2473304(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr7:2473349-2473350(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr7:2473382-2473383(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr7:2473387-2473388(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr7:2473409-2473410(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr7:2473455-2473456(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr7:2473502-2473503(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr7:2473514-2473515(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr7:2473553-2473554(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr7:2474016-2474017(+) m6A 3'UTR       24284625//24981863 chr7:2474133-2474134(+) m6A 3'UTR       24284625//24981863//22608085 chr7:2474149-2474150(+) m6A 3'UTR       24284625//24981863//22608085 chr7:2474181-2474182(+) m6A 3'UTR       24981863 chr7:2474200-2474201(+) m6A 3'UTR       24981863 chr7:2474523-2474524(+) m6A 3'UTR       - chr7:2474547-2474548(+) m6A 3'UTR       - chr7:2474596-2474597(+) m6A 3'UTR       - chr7:2474661-2474662(+) m6A 3'UTR       - chr7:2474674-2474675(+) m6A 3'UTR       - chr7:2474709-2474710(+) m6A 3'UTR       - chr7:2474959-2474960(+) m6A 3'UTR       - chr7:2475061-2475062(+) m6A 3'UTR       - chr7:2475077-2475078(+) m6A 3'UTR       - chr7:2478632-2478633(+) Gm 3'UTR//intron       - chr7:2483286-2483287(+) m6A 3'UTR//intron       - chr7:2483332-2483333(+) m6A 3'UTR//intron       - chr7:2483338-2483339(+) m6A 3'UTR//intron       - chr7:2483373-2483374(+) m6A 3'UTR//intron       - chr7:2483395-2483396(+) m6A 3'UTR//intron       - chr7:2483408-2483409(+) m6A 3'UTR//intron       - chr7:2485455-2485456(+) m6A 3'UTR//intron       - chr7:2485460-2485461(+) m6A 3'UTR//intron       - chr7:2485475-2485476(+) m6A 3'UTR//intron       - chr7:2485602-2485603(+) m6A 3'UTR//exon       25456834 chr7:2485644-2485645(+) m6A 3'UTR//exon       24284625//25456834 chr7:2485666-2485667(+) m6A 3'UTR//exon       24284625//25456834 chr7:2485689-2485690(+) m6A 3'UTR//exon       24284625//25456834 chr7:2485860-2485861(+) m6A 3'UTR//exon       24284625//25456834 chr7:2485905-2485906(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr7:2486001-2486002(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085 chr7:2486020-2486021(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863 chr7:2486110-2486111(+) m6A 3'UTR//exon       24284625//25456834 chr7:2486177-2486178(+) m6A 3'UTR//exon       24284625//24209618//25456834 chr7:2486243-2486244(+) m6A 3'UTR//exon       24284625//24209618//25456834 chr7:2486263-2486264(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863 chr7:2486346-2486347(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863 chr7:2486359-2486360(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863 chr7:2486369-2486370(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863 chr7:2486540-2486541(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr7:2486568-2486569(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr7:2486605-2486606(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr7:2486611-2486612(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr7:2486732-2486733(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr7:2486823-2486824(+) m6A 3'UTR//exon       24284625//25456834 chr7:2486940-2486941(+) m6A 3'UTR//exon       24284625 chr7:2487103-2487104(+) m6A 3'UTR//exon       24209618 chr7:2487128-2487129(+) m6A 3'UTR//exon       24209618 chr7:2487863-2487864(+) m6A 3'UTR       - chr7:2488032-2488033(+) m6A 3'UTR       - chr7:2488047-2488048(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsv2-miR-H10	Exosome K562 cells     24460325
	CHST12	Exosome Blood     - Nucleolus K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H10
Interactor2: CHST12

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg