Detail Information

Basic Information:


  VIRBase ID:  

VHID00176081

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H10:           NCKIPSD:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H10 NCKIPSD
miRBase
Accession/Entrez ID		 MIMAT0014353 51517
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - AF3P21//DIP//DIP1//ORF1//SPIN90//VIP54//WASLBP//WISH

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NCKIPSD
chr3:48714442(-) A-I      intronic
chr3:48714578(-) A-I      intronic
chr3:48714426(-) A-I      intronic
chr3:48714412(-) A-I      intronic
chr3:48714398(-) A-I      intronic
chr3:48710279(-) A-I      intronic
chr3:48713182(-) A-I      intronic
chr3:48714605(-) A-I      intronic
chr3:48714783(-) A-I      intronic
chr3:48714788(-) A-I      intronic
chr3:48713196(-) A-I      intronic
chr3:48714006(-) A-I      intronic
chr3:48714011(-) A-I      intronic
chr3:48714371(-) A-I      intronic
chr3:48714325(-) A-I      intronic
chr3:48714533(-) A-I      intronic
chr3:48714046(-) A-I      intronic
chr3:48714319(-) A-I      intronic
chr3:48714796(-) A-I      intronic
chr3:48714372(-) A-I      intronic
chr3:48713131(-) A-I      intronic
chr3:48713139(-) A-I      intronic
chr3:48713142(-) A-I      intronic
chr3:48713150(-) A-I      intronic
chr3:48713151(-) A-I      intronic
chr3:48713192(-) A-I      intronic
chr3:48714035(-) A-I      intronic
chr3:48714042(-) A-I      intronic
chr3:48714058(-) A-I      intronic
chr3:48714199(-) A-I      intronic
chr3:48714207(-) A-I      intronic
chr3:48714300(-) A-I      intronic
chr3:48714659(-) A-I      intronic
chr3:48714693(-) A-I      intronic
chr3:48714673(-) A-I      intronic
chr3:48714396(-) A-I      intronic
chr3:48714380(-) A-I      intronic
chr3:48714596(-) A-I      intronic
chr3:48714374(-) A-I      intronic
chr3:48714264(-) A-I      intronic
chr3:48714656(-) A-I      intronic
chr3:48714342(-) A-I      intronic
chr3:48710819(-) A-I      intronic
chr3:48710757(-) A-I      intronic
chr3:48714145(-) A-I      intronic
chr3:48714681(-) A-I      intronic
chr3:48714052(-) A-I      intronic
chr3:48713948(-) A-I      intronic
chr3:48714697(-) A-I      intronic
chr3:48713086(-) A-I      intronic
chr3:48714125(-) A-I      intronic
chr3:48710754(-) A-I      intronic
chr3:48714272(-) A-I      intronic
chr3:48714556(-) A-I      intronic
chr3:48714758(-) A-I      intronic
chr3:48714276(-) A-I      intronic
chr3:48714712(-) A-I      intronic
chr3:48710758(-) A-I      intronic
chr3:48714375(-) A-I      intronic
chr3:48714021(-) A-I      intronic
chr3:48714301(-) A-I      intronic
chr3:48714341(-) A-I      intronic
chr3:48710238(-) A-I      intronic
chr3:48710224(-) A-I      intronic
chr3:48710830(-) A-I      intronic
chr3:48713135(-) A-I      intronic
chr3:48714434(-) A-I      intronic
chr3:48710931(-) A-I      intronic
chr3:48714601(-) A-I      intronic
chr3:48714062(-) A-I      intronic
chr3:48714266(-) A-I      intronic
chr3:48710809(-) A-I      intronic
chr3:48713195(-) A-I      intronic
chr3:48714315(-) A-I      intronic
chr3:48714332(-) A-I      intronic
chr3:48714045(-) A-I      intronic
chr3:48714577(-) A-I      intronic
chr3:48710907(-) A-I      intronic
chr3:48714433(-) A-I      intronic
chr3:48714051(-) A-I      intronic
chr3:48714144(-) A-I      intronic
chr3:48714774(-) A-I      intronic
chr3:48710885(-) A-I      intronic
chr3:48713998(-) A-I      intronic
chr3:48714423(-) A-I      intronic
chr3:48714198(-) A-I      intronic
chr3:48714777(-) A-I      intronic
chr3:48710925(-) A-I      intronic
chr3:48714483(-) A-I      intronic
chr3:48714565(-) A-I      intronic
chr3:48714028(-) A-I      intronic
chr3:48713252(-) A-I      intronic
chr3:48714764(-) A-I      intronic
chr3:48714587(-) A-I      intronic
chr3:48714795(-) A-I      intronic
chr3:48714201(-) A-I      intronic
chr3:48710889(-) A-I      intronic
chr3:48714630(-) A-I      intronic
chr3:48710895(-) A-I      intronic
chr3:48714666(-) A-I      intronic
chr3:48714402(-) A-I      intronic
chr3:48710924(-) A-I      intronic
chr3:48714175(-) A-I      intronic
chr3:48713243(-) A-I      intronic
chr3:48714805(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NCKIPSD
chr3:48714342(-) A-I intron -    22327324
chr3:48714368(-) A-I intron -    22327324
chr3:48714565(-) A-I intron -    22327324
chr3:48714738(-) A-I intron -    22327324
chr3:48714052(-) A-I intron -    21960545
chr3:48714699(-) A-I intron -    21960545
chr3:48713070(-) T-C intron -    22484847
chr3:48713932(-) C-T intron -    22484847
chr3:48713948(-) A-G intron -    22484847
chr3:48714021(-) A-G intron -    22484847
chr3:48714028(-) A-G intron -    22484847
chr3:48714045(-) A-G intron -    22484847
chr3:48714051(-) A-G intron -    22484847
chr3:48714052(-) A-G intron -    22484847
chr3:48714062(-) A-G intron -    22484847
chr3:48714125(-) A-G intron -    22484847
chr3:48714145(-) A-G intron -    22484847
chr3:48714163(-) A-G intron -    22484847
chr3:48714266(-) A-G intron -    22484847
chr3:48714271(-) A-G intron -    22484847
chr3:48714276(-) A-G intron -    22484847
chr3:48714301(-) A-G intron -    22484847
chr3:48714341(-) A-G intron -    22484847
chr3:48714342(-) A-G intron -    22484847
chr3:48714368(-) A-G intron -    22484847
chr3:48714374(-) A-G intron -    22484847
chr3:48714433(-) A-G intron -    22484847
chr3:48714437(-) A-G intron -    22484847
chr3:48714447(-) A-G intron -    22484847
chr3:48714477(-) A-G intron -    22484847
chr3:48714482(-) A-G intron -    22484847
chr3:48714483(-) A-G intron -    22484847
chr3:48714565(-) A-G intron -    22484847
chr3:48714666(-) A-G intron -    22484847
chr3:48714699(-) A-G intron -    22484847
chr3:48714721(-) A-G intron -    22484847
chr3:48714738(-) A-G intron -    22484847
chr3:48714739(-) A-G intron -    22484847
chr3:48714758(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NCKIPSD
chr3:48711346-48711347(-) m6A 3'UTR       24981863//27773535
chr3:48711405-48711406(-) m6A 3'UTR       24284625//24981863//27773535
chr3:48711434-48711435(-) m6A 3'UTR       24284625//24981863//27773535
chr3:48711652-48711653(-) m6A 3'UTR       24284625//27773535
chr3:48711657-48711658(-) m6A 3'UTR       24284625//27773535
chr3:48711802-48711803(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr3:48711834-48711835(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr3:48711852-48711853(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr3:48711863-48711864(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr3:48711928-48711929(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr3:48712037-48712038(-) m6A 3'UTR//CDS       24284625//24209618//24981863//28052920
chr3:48712059-48712060(-) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535
chr3:48716000-48716001(-) m6A CDS//exon       24284625//27773535
chr3:48716015-48716016(-) m6A CDS//exon       24284625//27773535
chr3:48716057-48716058(-) m6A CDS//exon       24284625//27773535//27371828
chr3:48718565-48718566(-) Cm intron       -
chr3:48718843-48718844(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22608085
chr3:48718880-48718881(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr3:48718922-48718923(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr3:48719004-48719005(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr3:48719109-48719110(-) m6A 3'UTR//CDS       24284625//24981863//28052920//27773535//27773536
chr3:48719140-48719141(-) m6A 3'UTR//CDS       24284625//27773535//27773536
chr3:48719506-48719507(-) m6A 3'UTR//CDS       24284625//27773535//27773536
chr3:48719919-48719920(-) Y 3'UTR//5'UTR//CDS       26075521
chr3:48719959-48719960(-) m6A 3'UTR//5'UTR//CDS       24284625
chr3:48723327-48723328(-) m6A 5'UTR//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsv2-miR-H10
Exosome K562 cells     24460325
NCKIPSD
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H10
Interactor2: NCKIPSD

Evidence Support:


Prediction-Evidence cRep//miRanda//RNAHybrid
Support Database RepTar//VmiReg

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