Detail Information

Basic Information:


  VIRBase ID:  

VHID00175844

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H10:           MMACHC:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H10 MMACHC
miRBase
Accession/Entrez ID		 MIMAT0014353 25974
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - cblC

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MMACHC
chr1:45975651(+) A-I      3'UTR
chr1:45975193(+) A-I      3'UTR
chr1:45975681(+) A-I      3'UTR
chr1:45975364(+) A-I      3'UTR
chr1:45975295(+) A-I      3'UTR
chr1:45969886(+) A-I      intronic
chr1:45975286(+) A-I      3'UTR
chr1:45975563(+) A-I      3'UTR
chr1:45975288(+) A-I      3'UTR
chr1:45975731(+) A-I      3'UTR
chr1:45975566(+) A-I      3'UTR
chr1:45975572(+) A-I      3'UTR
chr1:45975592(+) A-I      3'UTR
chr1:45975597(+) A-I      3'UTR
chr1:45975531(+) A-I      3'UTR
chr1:45975242(+) A-I      3'UTR
chr1:45975664(+) A-I      3'UTR
chr1:45975677(+) A-I      3'UTR
chr1:45975755(+) A-I      3'UTR
chr1:45976094(+) A-I      3'UTR
chr1:45976106(+) A-I      3'UTR
chr1:45975327(+) A-I      3'UTR
chr1:45975331(+) A-I      3'UTR
chr1:45975149(+) A-I      3'UTR
chr1:45975111(+) A-I      3'UTR
chr1:45975271(+) A-I      3'UTR
chr1:45975117(+) A-I      3'UTR
chr1:45975507(+) A-I      3'UTR
chr1:45966528(+) A-I      intronic
chr1:45970872(+) A-I      intronic
chr1:45969839(+) A-I      intronic
chr1:45971321(+) A-I      intronic
chr1:45975670(+) A-I      3'UTR
chr1:45975610(+) A-I      3'UTR
chr1:45969823(+) A-I      intronic
chr1:45971030(+) A-I      intronic
chr1:45971213(+) A-I      intronic
chr1:45975269(+) A-I      3'UTR
chr1:45970009(+) A-I      intronic
chr1:45969844(+) A-I      intronic
chr1:45975358(+) A-I      3'UTR
chr1:45976112(+) A-I      3'UTR
chr1:45975202(+) A-I      3'UTR
chr1:45975602(+) A-I      3'UTR
chr1:45975573(+) A-I      3'UTR
chr1:45975109(+) A-I      3'UTR
chr1:45969030(+) A-I      intronic
chr1:45975554(+) A-I      3'UTR
chr1:45975628(+) A-I      3'UTR
chr1:45972638(+) A-I      intronic
chr1:45975615(+) A-I      3'UTR
chr1:45975525(+) A-I      3'UTR
chr1:45975345(+) A-I      3'UTR
chr1:45975250(+) A-I      3'UTR
chr1:45975669(+) A-I      3'UTR
chr1:45975498(+) A-I      3'UTR
chr1:45975346(+) A-I      3'UTR
chr1:45971041(+) A-I      intronic
chr1:45968516(+) A-I      intronic
chr1:45966290(+) A-I      intronic
chr1:45975574(+) A-I      3'UTR
chr1:45972825(+) A-I      intronic
chr1:45975591(+) A-I      3'UTR
chr1:45976006(+) A-I      3'UTR
chr1:45968132(+) A-I      intronic
chr1:45968870(+) A-I      intronic
chr1:45966416(+) A-I      intronic
chr1:45975754(+) A-I      3'UTR
chr1:45976113(+) A-I      3'UTR
chr1:45975214(+) A-I      3'UTR
chr1:45976220(+) A-I      3'UTR
chr1:45975266(+) A-I      3'UTR
chr1:45972342(+) A-I      intronic
chr1:45971064(+) A-I      intronic
chr1:45975537(+) A-I      3'UTR
chr1:45975125(+) A-I      3'UTR
chr1:45975534(+) A-I      3'UTR
chr1:45975515(+) A-I      3'UTR
chr1:45975757(+) A-I      3'UTR
chr1:45970380(+) A-I      intronic
chr1:45975673(+) A-I      3'UTR
chr1:45975564(+) A-I      3'UTR
chr1:45975186(+) A-I      3'UTR
chr1:45975634(+) A-I      3'UTR
chr1:45975588(+) A-I      3'UTR
chr1:45966527(+) A-I      intronic
chr1:45975224(+) A-I      3'UTR
chr1:45969237(+) A-I      intronic
chr1:45972356(+) A-I      intronic
chr1:45975499(+) A-I      3'UTR
chr1:45971062(+) A-I      intronic
chr1:45975638(+) A-I      3'UTR
chr1:45972580(+) A-I      intronic
chr1:45975323(+) A-I      3'UTR
chr1:45968861(+) A-I      intronic
chr1:45975758(+) A-I      3'UTR
chr1:45975714(+) A-I      3'UTR
chr1:45975568(+) A-I      3'UTR
chr1:45975308(+) A-I      3'UTR
chr1:45975642(+) A-I      3'UTR
chr1:45972753(+) A-I      intronic
chr1:45971155(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED MMACHC
chr1:45975105(+) A-I exon 3'UTR    15258596
chr1:45975109(+) A-I exon 3'UTR    15258596
chr1:45975125(+) A-I exon 3'UTR    15258596
chr1:45976220(+) A-I exon 3'UTR    19478186
chr1:45975498(+) A-I intron -    22327324
chr1:45975628(+) A-I intron -    21960545   //22327324
chr1:45975669(+) A-I intron -    22327324
chr1:45975670(+) A-I intron -    22327324
chr1:45975499(+) A-I intron -    21960545
chr1:45968044(+) T-C intron -    22484847
chr1:45972431(+) T-C intron -    22484847
chr1:45975105(+) A-G intron -    22484847
chr1:45975186(+) A-G intron -    22484847
chr1:45975250(+) A-G intron -    22484847
chr1:45975308(+) A-G intron -    22484847
chr1:45975345(+) A-G intron -    22484847
chr1:45975346(+) A-G intron -    22484847
chr1:45975358(+) A-G intron -    22484847
chr1:45975498(+) A-G intron -    22484847
chr1:45975591(+) A-G intron -    22484847
chr1:45975628(+) A-G intron -    22484847
chr1:45975669(+) A-G intron -    22484847
chr1:45975670(+) A-G intron -    22484847
chr1:45975673(+) A-G intron -    22484847
chr1:45975754(+) A-G intron -    22484847
chr1:45975757(+) A-G intron -    22484847
chr1:45976112(+) A-G intron -    22484847
chr1:45976220(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MMACHC
chr1:45965966-45965967(+) m6A 5'UTR       24981863
chr1:45966034-45966035(+) Am 5'UTR//CDS       -
chr1:45966044-45966045(+) m6A 5'UTR//CDS       24284625//24981863
chr1:45973044-45973045(+) m6A 5'UTR//CDS       24284625//24981863
chr1:45973184-45973185(+) m6A CDS       -
chr1:45973961-45973962(+) m6A CDS       -
chr1:45974031-45974032(+) m6A CDS       24284625
chr1:45974571-45974572(+) m6A CDS       24284625//24209618//24981863//22608085
chr1:45974647-45974648(+) m6A CDS       24284625//24209618//24981863//22608085
chr1:45974783-45974784(+) m6A CDS       24284625//24209618//25456834//24981863//22608085
chr1:45974902-45974903(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr1:45974930-45974931(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr1:45975059-45975060(+) m6A 3'UTR//intron       22608085
chr1:45975550-45975551(+) m6A 3'UTR//intron       24209618
chr1:45975573-45975574(+) m6A 3'UTR//intron       24209618
chr1:45976050-45976051(+) m6A 3'UTR//exon//intron       24284625//24981863//22608085
chr1:45976143-45976144(+) m6A 3'UTR//exon//intron       24284625//24981863//22608085
chr1:45976167-45976168(+) m6A 3'UTR//exon//intron       24284625//24209618//24981863//22608085
chr1:45976200-45976201(+) m6A 3'UTR       24284625//24209618//24981863//22608085
chr1:45976222-45976223(+) m6A 3'UTR       24284625//24209618//24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsv2-miR-H10
Exosome K562 cells     24460325
MMACHC
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H10
Interactor2: MMACHC

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

Starting a new search, please wait ...