Detail Information

Basic Information:


  VIRBase ID:  

VHID00175480

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H10:           TUBB4A:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H10 TUBB4A
miRBase
Accession/Entrez ID		 MIMAT0014353 10382
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - beta-5//DYT4//TUBB4

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TUBB4A
chr19:6500274(-) A-I      intronic
chr19:6497397(-) A-I      intronic
chr19:6497509(-) A-I      intronic
chr19:6500363(-) A-I      intronic
chr19:6500531(-) A-I      intronic
chr19:6497396(-) A-I      intronic
chr19:6496925(-) A-I      intronic
chr19:6496939(-) A-I      intronic
chr19:6496977(-) A-I      intronic
chr19:6497341(-) A-I      intronic
chr19:6499092(-) A-I      intronic
chr19:6499941(-) A-I      intronic
chr19:6500261(-) A-I      intronic
chr19:6500304(-) A-I      intronic
chr19:6500318(-) A-I      intronic
chr19:6500322(-) A-I      intronic
chr19:6500494(-) A-I      intronic
chr19:6497689(-) A-I      intronic
chr19:6499940(-) A-I      intronic
chr19:6497411(-) A-I      intronic
chr19:6500093(-) A-I      intronic
chr19:6496810(-) A-I      intronic
chr19:6499250(-) A-I      intronic
chr19:6499970(-) A-I      intronic
chr19:6497501(-) A-I      intronic
chr19:6500075(-) A-I      intronic
chr19:6497441(-) A-I      intronic
chr19:6497357(-) A-I      intronic
chr19:6499146(-) A-I      intronic
chr19:6497480(-) A-I      intronic
chr19:6499913(-) A-I      intronic
chr19:6497116(-) A-I      intronic
chr19:6497700(-) A-I      intronic
chr19:6497536(-) A-I      intronic
chr19:6497142(-) A-I      intronic
chr19:6500720(-) A-I      intronic
chr19:6500256(-) A-I      intronic
chr19:6497978(-) A-I      intronic
chr19:6500491(-) A-I      intronic
chr19:6497523(-) A-I      intronic
chr19:6500245(-) A-I      intronic
chr19:6496746(-) A-I      intronic
chr19:6497701(-) A-I      intronic
chr19:6500643(-) A-I      intronic
chr19:6497117(-) A-I      intronic
chr19:6499217(-) A-I      intronic
chr19:6497443(-) A-I      intronic
chr19:6500242(-) A-I      intronic
chr19:6497176(-) A-I      intronic
chr19:6500387(-) A-I      intronic
chr19:6500081(-) A-I      intronic
chr19:6497751(-) A-I      intronic
chr19:6500278(-) A-I      intronic
chr19:6499091(-) A-I      intronic
chr19:6500388(-) A-I      intronic
chr19:6497333(-) A-I      intronic
chr19:6496451(-) A-I      intronic
chr19:6500034(-) A-I      intronic
chr19:6500416(-) A-I      intronic
chr19:6500358(-) A-I      intronic
chr19:6497370(-) A-I      intronic
chr19:6497549(-) A-I      intronic
chr19:6500005(-) A-I      intronic
chr19:6500518(-) A-I      intronic
chr19:6497771(-) A-I      intronic
chr19:6500485(-) A-I      intronic
chr19:6500255(-) A-I      intronic
chr19:6497471(-) A-I      intronic
chr19:6499894(-) A-I      intronic
chr19:6500268(-) A-I      intronic
chr19:6500644(-) A-I      intronic
chr19:6499935(-) A-I      intronic
chr19:6500377(-) A-I      intronic
chr19:6499073(-) A-I      intronic
chr19:6500640(-) A-I      intronic
chr19:6499227(-) A-I      intronic
chr19:6497822(-) A-I      intronic
chr19:6497496(-) A-I      intronic
chr19:6499195(-) A-I      intronic
chr19:6500630(-) A-I      intronic
chr19:6497189(-) A-I      intronic
chr19:6498033(-) A-I      intronic
chr19:6500729(-) A-I      intronic
chr19:6500652(-) A-I      intronic
chr19:6499079(-) A-I      intronic
chr19:6497723(-) A-I      intronic
chr19:6498073(-) A-I      intronic
chr19:6500514(-) A-I      intronic
chr19:6499914(-) A-I      intronic
chr19:6500546(-) A-I      intronic
chr19:6497369(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TUBB4A
chr19:6494425-6494426(-) m6A 3'UTR       24981863
chr19:6494602-6494603(-) m6A 3'UTR       24981863//27773535
chr19:6494813-6494814(-) m6A 3'UTR       24284625//24981863//27773535
chr19:6494883-6494884(-) m6A 3'UTR       24284625//24981863//27773535
chr19:6494904-6494905(-) m6A 3'UTR       24284625//24981863//27773535
chr19:6495101-6495102(-) m6A 3'UTR       24284625//24981863//27371828
chr19:6495377-6495378(-) Y CDS       26075521
chr19:6495499-6495500(-) m6A CDS       27371828//22608085
chr19:6495616-6495617(-) m6A CDS       22608085
chr19:6495838-6495839(-) m6A CDS       24284625//22575960
chr19:6495914-6495915(-) m6A CDS       24284625//27371828//22575960
chr19:6495979-6495980(-) m6A 3'UTR//CDS       24284625//27371828//22575960
chr19:6496015-6496016(-) m6A 3'UTR//CDS       24284625//27371828//22575960//22608085
chr19:6496027-6496028(-) m6A 3'UTR//CDS       24284625//27371828//22575960//22608085
chr19:6500633-6500634(-) m6A 3'UTR//intron       27371828
chr19:6502322-6502323(-) m6A 5'UTR//CDS//intron       24981863
chr19:6502401-6502402(-) m6A 5'UTR//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsv2-miR-H10
Exosome K562 cells     24460325
TUBB4A
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H10
Interactor2: TUBB4A

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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