Basic Information:

  VIRBase ID:  

VHID00174830

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H10:  MIMAT0014353          RARA:  NM_000964     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H10	RARA
miRBase Accession/Entrez ID	MIMAT0014353	5914
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	NR1B1//RAR

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RARA	chr17:38495007(+) A-I      intronic chr17:38492718(+) A-I      intronic chr17:38492766(+) A-I      intronic chr17:38491804(+) A-I      intronic chr17:38495227(+) A-I      intronic chr17:38491765(+) A-I      intronic chr17:38491799(+) A-I      intronic chr17:38491886(+) A-I      intronic chr17:38491686(+) A-I      intronic chr17:38491756(+) A-I      intronic chr17:38509055(+) A-I      intronic chr17:38492602(+) A-I      intronic chr17:38509072(+) A-I      intronic chr17:38492471(+) A-I      intronic chr17:38492588(+) A-I      intronic chr17:38489449(+) A-I      intronic chr17:38492005(+) A-I      intronic chr17:38492032(+) A-I      intronic chr17:38509180(+) A-I      intronic chr17:38491780(+) A-I      intronic chr17:38509065(+) A-I      intronic chr17:38492108(+) A-I      intronic chr17:38492847(+) A-I      intronic chr17:38493073(+) A-I      intronic chr17:38492246(+) A-I      intronic chr17:38509049(+) A-I      intronic chr17:38492095(+) A-I      intronic chr17:38492496(+) A-I      intronic chr17:38492381(+) A-I      intronic chr17:38491822(+) A-I      intronic chr17:38492121(+) A-I      intronic chr17:38491786(+) A-I      intronic chr17:38493224(+) A-I      intronic chr17:38485755(+) A-I      intronic chr17:38509088(+) A-I      intronic chr17:38495143(+) A-I      intronic chr17:38492105(+) A-I      intronic chr17:38492902(+) A-I      intronic chr17:38492589(+) A-I      intronic chr17:38471566(+) A-I      intronic chr17:38492901(+) A-I      intronic chr17:38509704(+) A-I      intronic chr17:38494943(+) A-I      intronic chr17:38509173(+) A-I      intronic chr17:38489721(+) A-I      intronic chr17:38492006(+) A-I      intronic chr17:38489613(+) A-I      intronic chr17:38492822(+) A-I      intronic chr17:38491687(+) A-I      intronic chr17:38494938(+) A-I      intronic chr17:38494840(+) A-I      intronic chr17:38495149(+) A-I      intronic chr17:38509813(+) A-I      intronic chr17:38492091(+) A-I      intronic chr17:38492512(+) A-I      intronic chr17:38492347(+) A-I      intronic chr17:38493027(+) A-I      intronic chr17:38492724(+) A-I      intronic chr17:38509848(+) A-I      intronic chr17:38512342(+) A-I      NonSyn:Glu->Gly chr17:38492914(+) A-I      intronic chr17:38492423(+) A-I      intronic chr17:38500607(+) A-I      intronic chr17:38491795(+) A-I      intronic chr17:38471572(+) A-I      intronic chr17:38492430(+) A-I      intronic chr17:38492132(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RARA	chr17:38512342(+) A-I exon CDS    19478186 chr17:38491822(+) A-G intron -    22484847 chr17:38492121(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RARA	chr17:38465502-38465503(+) m6A 5'UTR       24981863 chr17:38474604-38474605(+) m6A 5'UTR//intron       24284625//24981863 chr17:38487117-38487118(+) m6A 5'UTR//exon       24284625 chr17:38487194-38487195(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr17:38487224-38487225(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:38487240-38487241(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:38487253-38487254(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:38487301-38487302(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:38487326-38487327(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:38487340-38487341(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr17:38487366-38487367(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr17:38487435-38487436(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr17:38487571-38487572(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr17:38497653-38497654(+) m6A CDS//intron       24284625//24209618//24981863//22608085 chr17:38497723-38497724(+) m6A CDS//intron       24981863 chr17:38498645-38498646(+) m6A 5'UTR//intron       24209618//25456834//27371828//27773536 chr17:38498722-38498723(+) m6A 5'UTR//exon//intron       25456834//24981863 chr17:38498765-38498766(+) m6A 5'UTR//exon//intron       25456834//24981863 chr17:38498785-38498786(+) m6A 5'UTR//exon//intron       25456834//24981863 chr17:38498799-38498800(+) m6A 5'UTR//exon//intron       25456834//24981863 chr17:38498919-38498920(+) m6A 5'UTR//exon//intron       24981863 chr17:38498933-38498934(+) m6A 5'UTR//exon//intron       24981863 chr17:38504575-38504576(+) m6A 5'UTR//CDS//exon//intron       - chr17:38506093-38506094(+) m6A CDS//intron       24209618 chr17:38506120-38506121(+) m6A CDS//intron       24209618 chr17:38507763-38507764(+) m6A exon//intron       24981863 chr17:38508179-38508180(+) m6A CDS//exon       24981863 chr17:38508283-38508284(+) m6A CDS//exon       24284625 chr17:38508596-38508597(+) m6A CDS//exon       24284625 chr17:38508613-38508614(+) m6A CDS//exon       24284625 chr17:38508628-38508629(+) m6A CDS//exon       24284625 chr17:38508641-38508642(+) m6A CDS//exon       24284625 chr17:38508666-38508667(+) m6A CDS//exon       24284625 chr17:38508751-38508752(+) m6A CDS//exon       24284625 chr17:38510590-38510591(+) m6A CDS//exon       24284625 chr17:38510623-38510624(+) m6A CDS//exon       24284625 chr17:38510628-38510629(+) m6A CDS//exon       24284625 chr17:38511523-38511524(+) m6A CDS//exon       24284625 chr17:38511538-38511539(+) m6A CDS//exon       24284625 chr17:38511547-38511548(+) m6A CDS//exon       24284625 chr17:38512335-38512336(+) m6A CDS//exon       24209618//25456834//24981863//26404942//22608085 chr17:38512350-38512351(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//22608085 chr17:38512363-38512364(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//22608085 chr17:38512495-38512496(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr17:38512597-38512598(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr17:38512641-38512642(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr17:38512664-38512665(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr17:38512712-38512713(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr17:38512774-38512775(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr17:38512823-38512824(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr17:38512845-38512846(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr17:38512875-38512876(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr17:38512919-38512920(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr17:38513564-38513565(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsv2-miR-H10	Exosome K562 cells     24460325
	RARA	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H10
Interactor2: RARA

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg