Detail Information

Basic Information:


  VIRBase ID:  

VHID00174622

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H10:           MTHFR:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H10 MTHFR
miRBase
Accession/Entrez ID		 MIMAT0014353 4524
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MTHFR
chr1:11846714(-) A-I      3'UTR
chr1:11846711(-) A-I      3'UTR
chr1:11846693(-) A-I      3'UTR
chr1:11846697(-) A-I      3'UTR
chr1:11846740(-) A-I      3'UTR
chr1:11846748(-) A-I      3'UTR
chr1:11845928(-) A-I      3'UTR
chr1:11857171(-) A-I      intronic
chr1:11846069(-) A-I      3'UTR
chr1:11845910(-) A-I      3'UTR
chr1:11859888(-) A-I      intronic
chr1:11846063(-) A-I      3'UTR
chr1:11859754(-) A-I      intronic
chr1:11845875(-) A-I      3'UTR
chr1:11846062(-) A-I      3'UTR
chr1:11846045(-) A-I      3'UTR
chr1:11845918(-) A-I      3'UTR
chr1:11856993(-) A-I      intronic
chr1:11859858(-) A-I      intronic
chr1:11858372(-) A-I      intronic
chr1:11846033(-) A-I      3'UTR
chr1:11859080(-) A-I      intronic
chr1:11857012(-) A-I      intronic
chr1:11845983(-) A-I      3'UTR
chr1:11857039(-) A-I      intronic
chr1:11857064(-) A-I      intronic
chr1:11857073(-) A-I      intronic
chr1:11845960(-) A-I      3'UTR
chr1:11845886(-) A-I      3'UTR
chr1:11857118(-) A-I      intronic
chr1:11857134(-) A-I      intronic
chr1:11859004(-) A-I      intronic
chr1:11857141(-) A-I      intronic
chr1:11859756(-) A-I      intronic
chr1:11857153(-) A-I      intronic
chr1:11845954(-) A-I      3'UTR
chr1:11859002(-) A-I      intronic
chr1:11857196(-) A-I      intronic
chr1:11857214(-) A-I      intronic
chr1:11857227(-) A-I      intronic
chr1:11857398(-) A-I      intronic
chr1:11857408(-) A-I      intronic
chr1:11845934(-) A-I      3'UTR
chr1:11857594(-) A-I      intronic
chr1:11858994(-) A-I      intronic
chr1:11859859(-) A-I      intronic
chr1:11857634(-) A-I      intronic
chr1:11858857(-) A-I      intronic
chr1:11857191(-) A-I      intronic
chr1:11856999(-) A-I      intronic
chr1:11859856(-) A-I      intronic
chr1:11858974(-) A-I      intronic
chr1:11857166(-) A-I      intronic
chr1:11859962(-) A-I      intronic
chr1:11857508(-) A-I      intronic
chr1:11858970(-) A-I      intronic
chr1:11857222(-) A-I      intronic
chr1:11859761(-) A-I      intronic
chr1:11857582(-) A-I      intronic
chr1:11857011(-) A-I      intronic
chr1:11857429(-) A-I      intronic
chr1:11857453(-) A-I      intronic
chr1:11857643(-) A-I      intronic
chr1:11859072(-) A-I      intronic
chr1:11859780(-) A-I      intronic
chr1:11857206(-) A-I      intronic
chr1:11857108(-) A-I      intronic
chr1:11857642(-) A-I      intronic
chr1:11857132(-) A-I      intronic
chr1:11858861(-) A-I      intronic
chr1:11859000(-) A-I      intronic
chr1:11857013(-) A-I      intronic
chr1:11857659(-) A-I      intronic
chr1:11857298(-) A-I      intronic
chr1:11864504(-) A-I      5'UTR
chr1:11858971(-) A-I      intronic
chr1:11857107(-) A-I      intronic
chr1:11857090(-) A-I      intronic
chr1:11857116(-) A-I      intronic
chr1:11857170(-) A-I      intronic
chr1:11853691(-) A-I      intronic
chr1:11864442(-) A-I      5'UTR
chr1:11857099(-) A-I      intronic
chr1:11857411(-) A-I      intronic
chr1:11859955(-) A-I      intronic
chr1:11857583(-) A-I      intronic
chr1:11864357(-) A-I      5'UTR
chr1:11857569(-) A-I      intronic
chr1:11857488(-) A-I      intronic
chr1:11859853(-) A-I      intronic
chr1:11856997(-) A-I      intronic
chr1:11858440(-) A-I      intronic
chr1:11859968(-) A-I      intronic
chr1:11859071(-) A-I      intronic
chr1:11859970(-) A-I      intronic
chr1:11857167(-) A-I      intronic
chr1:11857076(-) A-I      intronic
chr1:11857190(-) A-I      intronic
chr1:11859074(-) A-I      intronic
chr1:11857126(-) A-I      intronic
chr1:11857661(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED MTHFR
chr1:11857298(-) A-G intron -    22484847
chr1:11856997(-) A-G intron -    22484847
chr1:11856999(-) A-G intron -    22484847
chr1:11857011(-) A-G intron -    22484847
chr1:11857076(-) A-G intron -    22484847
chr1:11857090(-) A-G intron -    22484847
chr1:11857099(-) A-G intron -    22484847
chr1:11857132(-) A-G intron -    22484847
chr1:11857166(-) A-G intron -    22484847
chr1:11857167(-) A-G intron -    22484847
chr1:11857170(-) A-G intron -    22484847
chr1:11857190(-) A-G intron -    22484847
chr1:11857191(-) A-G intron -    22484847
chr1:11857206(-) A-G intron -    22484847
chr1:11857222(-) A-G intron -    22484847
chr1:11857411(-) A-G intron -    22484847
chr1:11857429(-) A-G intron -    22484847
chr1:11857453(-) A-G intron -    22484847
chr1:11857488(-) A-G intron -    22484847
chr1:11857569(-) A-G intron -    22484847
chr1:11857582(-) A-G intron -    22484847
chr1:11857583(-) A-G intron -    22484847
chr1:11858861(-) A-G intron -    22484847
chr1:11859000(-) A-G intron -    22484847
chr1:11859071(-) A-G intron -    22484847
chr1:11859072(-) A-G intron -    22484847
chr1:11859074(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MTHFR
chr1:11845792-11845793(-) m6A 3'UTR       27773535
chr1:11845800-11845801(-) m6A 3'UTR       27773535
chr1:11845818-11845819(-) m6A 3'UTR       27773535
chr1:11845885-11845886(-) m6A 3'UTR       27773535
chr1:11848126-11848127(-) m6A 3'UTR       27773536
chr1:11848135-11848136(-) m6A 3'UTR       27773536
chr1:11848699-11848700(-) m6A 3'UTR       27773536
chr1:11848808-11848809(-) m6A 3'UTR       24284625//25456834//27371828//27773536//22608085
chr1:11848864-11848865(-) m6A 3'UTR       24284625//25456834//27371828//27773536//22608085
chr1:11848944-11848945(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22608085
chr1:11849023-11849024(-) m6A 3'UTR       25456834//24981863//22608085
chr1:11849031-11849032(-) m6A 3'UTR       25456834//24981863//22608085
chr1:11849094-11849095(-) m6A 3'UTR       25456834//24981863//22608085
chr1:11849637-11849638(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr1:11849656-11849657(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr1:11850071-11850072(-) m6A 3'UTR       24284625
chr1:11850337-11850338(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:11850370-11850371(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:11850381-11850382(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:11850410-11850411(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:11850473-11850474(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:11850542-11850543(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:11850565-11850566(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:11850595-11850596(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:11850660-11850661(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:11850794-11850795(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:11850821-11850822(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:11850839-11850840(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:11851356-11851357(-) m6A CDS       27773535
chr1:11851375-11851376(-) m6A CDS       27773535
chr1:11860324-11860325(-) m6A CDS       24284625
chr1:11861237-11861238(-) m6A CDS       24284625
chr1:11863041-11863042(-) m6A CDS       25456834//27371828
chr1:11863060-11863061(-) m6A CDS       25456834//27773535//27371828
chr1:11863150-11863151(-) m6A CDS       25456834//27773535//27371828//27773536//22608085
chr1:11863180-11863181(-) m6A 5'UTR//CDS       25456834//27371828//27773536//22608085
chr1:11863262-11863263(-) m6A 5'UTR//intron       25456834//27371828//27773536
chr1:11863357-11863358(-) m6A 5'UTR//intron       27371828
chr1:11863566-11863567(-) m6A 5'UTR//CDS//intron       25456834//24981863//27371828
chr1:11863634-11863635(-) m6A 5'UTR//intron       25456834//24981863//27371828
chr1:11863895-11863896(-) m6A 5'UTR//intron       24284625//27773535//27371828
chr1:11865254-11865255(-) m6A 5'UTR//intron       -
chr1:11865274-11865275(-) m6A 5'UTR//intron       -
chr1:11865295-11865296(-) m6A 5'UTR//intron       27371828
chr1:11865318-11865319(-) m6A 5'UTR//intron       27371828
chr1:11865414-11865415(-) m6A 5'UTR//intron       -
chr1:11865459-11865460(-) m6A 5'UTR//intron       -
chr1:11865558-11865559(-) m6A 5'UTR//intron       24284625//25456834//27371828//27773536//22608085
chr1:11865729-11865730(-) m6A 5'UTR//intron       24284625//25456834//24981863//27371828//27773536//22608085
chr1:11865891-11865892(-) m6A 5'UTR//intron       24284625//25456834//24981863//27371828//27773536//22608085
chr1:11865951-11865952(-) m6A 5'UTR       25456834//24981863//27371828//27773536//22608085
chr1:11866294-11866295(-) m6A 5'UTR       25456834//24981863
chr1:11866337-11866338(-) m6A 5'UTR       25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsv2-miR-H10
Exosome K562 cells     24460325
MTHFR
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H10
Interactor2: MTHFR

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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