Basic Information:

  VIRBase ID:  

VHID00174440

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H10:  MIMAT0014353          HOXB9:  NM_024017     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H10	HOXB9
miRBase Accession/Entrez ID	MIMAT0014353	3219
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HOX-2.5//HOX2//HOX2E

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	HOXB9	chr17:46698738-46698739(-) m6A 3'UTR       24284625//24209618//24981863//22608085 chr17:46698773-46698774(-) m6A 3'UTR       24284625//24209618//24981863//22608085 chr17:46698890-46698891(-) m6A 3'UTR       24284625 chr17:46698976-46698977(-) m6A 3'UTR       24284625//27773536 chr17:46699096-46699097(-) m6A 3'UTR       24284625 chr17:46699110-46699111(-) m6A 3'UTR       24284625 chr17:46699180-46699181(-) m6A 3'UTR       24284625//24209618 chr17:46699345-46699346(-) m6A 3'UTR       24284625//24209618//24981863//22608085 chr17:46699406-46699407(-) m6A 3'UTR       24284625//24209618//24981863//22608085 chr17:46699747-46699748(-) m6A 3'UTR       24981863 chr17:46699758-46699759(-) m6A 3'UTR       24981863 chr17:46699783-46699784(-) m6A 3'UTR       24981863 chr17:46699854-46699855(-) m6A 3'UTR       24981863//27773535 chr17:46699881-46699882(-) m6A 3'UTR       24981863//27773535 chr17:46699988-46699989(-) m6A 3'UTR       - chr17:46700310-46700311(-) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr17:46700333-46700334(-) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr17:46700354-46700355(-) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr17:46700376-46700377(-) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr17:46703134-46703135(-) m6A CDS       24284625//24209618//24981863//27371828//27773536//22608085 chr17:46703161-46703162(-) m6A CDS       24284625//24209618//24981863//27371828//27773536//22608085 chr17:46703175-46703176(-) m6A CDS       24284625//24209618//24981863//27371828//27773536//22608085 chr17:46703213-46703214(-) m6A CDS       24284625//24209618//24981863//27371828//27773536//22608085 chr17:46703241-46703242(-) m6A CDS       24284625//24209618//24981863//27371828//27773536//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsv2-miR-H10	Exosome K562 cells     24460325
	HOXB9	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H10
Interactor2: HOXB9

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg