Basic Information:

  VIRBase ID:  

VHID00174127

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H10:  MIMAT0014353          COX6B1:  NM_001863     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H10	COX6B1
miRBase Accession/Entrez ID	MIMAT0014353	1340
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	COX6B//COXG//COXVIb1//MC4DN7

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	COX6B1	chr19:36144791(+) A-I      intronic chr19:36144849(+) A-I      intronic chr19:36145255(+) A-I      intronic chr19:36142995(+) A-I      intronic chr19:36141051(+) A-I      intronic chr19:36141140(+) A-I      intronic chr19:36141179(+) A-I      intronic chr19:36141466(+) A-I      intronic chr19:36141586(+) A-I      intronic chr19:36142988(+) A-I      intronic chr19:36144062(+) A-I      intronic chr19:36144600(+) A-I      intronic chr19:36141381(+) A-I      intronic chr19:36145351(+) A-I      intronic chr19:36144009(+) A-I      intronic chr19:36145355(+) A-I      intronic chr19:36144127(+) A-I      intronic chr19:36145170(+) A-I      intronic chr19:36145169(+) A-I      intronic chr19:36144137(+) A-I      intronic chr19:36142652(+) A-I      intronic chr19:36141463(+) A-I      intronic chr19:36141359(+) A-I      intronic chr19:36144074(+) A-I      intronic chr19:36144803(+) A-I      intronic chr19:36141045(+) A-I      intronic chr19:36142495(+) A-I      intronic chr19:36141489(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	COX6B1	chr19:36139186-36139187(+) m6A 5'UTR       24284625//25456834//24981863//22608085 chr19:36139573-36139574(+) m6A 5'UTR//intron       24284625//24981863//27773535 chr19:36139605-36139606(+) m6A 5'UTR//intron       24284625//27773535 chr19:36142155-36142156(+) m6A CDS       24981863//26404942 chr19:36142163-36142164(+) m6A CDS       24981863//26404942 chr19:36142176-36142177(+) m6A CDS       24981863//26404942 chr19:36142184-36142185(+) m6A CDS       24981863//26404942 chr19:36142218-36142219(+) m6A CDS       24981863//26404942//27773535 chr19:36142223-36142224(+) m6A CDS       24981863//26404942//27773535 chr19:36142230-36142231(+) m6A CDS       24981863//26404942//27773535 chr19:36142242-36142243(+) m6A CDS       24981863//26404942//27773535//22575960 chr19:36149502-36149503(+) m6A CDS       27773535//22575960 chr19:36149549-36149550(+) m6A 3'UTR       27773535//22575960 chr19:36149607-36149608(+) m6A 3'UTR       24284625//27773535 chr19:36149667-36149668(+) m6A 3'UTR       24284625//27773535 chr19:36149685-36149686(+) m6A 3'UTR       24284625//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsv2-miR-H10	Exosome K562 cells     24460325
	COX6B1	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H10
Interactor2: COX6B1

Evidence Support:

Prediction-Evidence	cRep//RNAHybrid
Support Database	RepTar//VmiReg