Basic Information:

  VIRBase ID:  

VHID00173977

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H10:  MIMAT0014353          ATP2B4:  NM_001365784     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H10	ATP2B4
miRBase Accession/Entrez ID	MIMAT0014353	493
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ATP2B2//MXRA1//PMCA4//PMCA4b//PMCA4x

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ATP2B4	chr1:203695256(+) A-I      intronic chr1:203686131(+) A-I      intronic chr1:203699118(+) A-I      intronic chr1:203695252(+) A-I      intronic chr1:203699107(+) A-I      intronic chr1:203686145(+) A-I      intronic chr1:203695234(+) A-I      intronic chr1:203694152(+) A-I      intronic chr1:203694145(+) A-I      intronic chr1:203694135(+) A-I      intronic chr1:203686187(+) A-I      intronic chr1:203686179(+) A-I      intronic chr1:203686166(+) A-I      intronic chr1:203695246(+) A-I      intronic chr1:203695247(+) A-I      intronic chr1:203686164(+) A-I      intronic chr1:203686126(+) A-I      intronic chr1:203686125(+) A-I      intronic chr1:203695228(+) A-I      intronic chr1:203694155(+) A-I      intronic chr1:203604663(+) A-I      intronic chr1:203693421(+) A-I      intronic chr1:203681510(+) A-I      intronic chr1:203681608(+) A-I      intronic chr1:203602489(+) A-I      intronic chr1:203602575(+) A-I      intronic chr1:203615512(+) A-I      intronic chr1:203616753(+) A-I      intronic chr1:203602654(+) A-I      intronic chr1:203602785(+) A-I      intronic chr1:203627967(+) A-I      intronic chr1:203603861(+) A-I      intronic chr1:203604679(+) A-I      intronic chr1:203604418(+) A-I      intronic chr1:203604054(+) A-I      intronic chr1:203604700(+) A-I      intronic chr1:203604436(+) A-I      intronic chr1:203627643(+) A-I      intronic chr1:203604637(+) A-I      intronic chr1:203616297(+) A-I      intronic chr1:203623876(+) A-I      intronic chr1:203604638(+) A-I      intronic chr1:203604420(+) A-I      intronic chr1:203693426(+) A-I      intronic chr1:203701304(+) A-I      intronic chr1:203620779(+) A-I      intronic chr1:203681563(+) A-I      intronic chr1:203646655(+) A-I      intronic chr1:203638704(+) A-I      intronic chr1:203694028(+) A-I      intronic chr1:203627574(+) A-I      intronic chr1:203638694(+) A-I      intronic chr1:203623908(+) A-I      intronic chr1:203618779(+) A-I      intronic chr1:203604053(+) A-I      intronic chr1:203604687(+) A-I      intronic chr1:203609691(+) A-I      intronic chr1:203627561(+) A-I      intronic chr1:203638677(+) A-I      intronic chr1:203681572(+) A-I      intronic chr1:203609687(+) A-I      intronic chr1:203602530(+) A-I      intronic chr1:203686057(+) A-I      intronic chr1:203613322(+) A-I      intronic chr1:203695304(+) A-I      intronic chr1:203692453(+) A-I      intronic chr1:203602522(+) A-I      intronic chr1:203694266(+) A-I      intronic chr1:203613323(+) A-I      intronic chr1:203603829(+) A-I      intronic chr1:203602630(+) A-I      intronic chr1:203623798(+) A-I      intronic chr1:203623904(+) A-I      intronic chr1:203603868(+) A-I      intronic chr1:203695076(+) A-I      intronic chr1:203679509(+) A-I      intronic chr1:203628053(+) A-I      intronic chr1:203616355(+) A-I      intronic chr1:203616347(+) A-I      intronic chr1:203687702(+) A-I      intronic chr1:203604409(+) A-I      intronic chr1:203629983(+) A-I      intronic chr1:203690895(+) A-I      intronic chr1:203656407(+) A-I      intronic chr1:203704889(+) A-I      intronic chr1:203688171(+) A-I      intronic chr1:203604417(+) A-I      intronic chr1:203629213(+) A-I      intronic chr1:203695096(+) A-I      intronic chr1:203623856(+) A-I      intronic chr1:203694131(+) A-I      intronic chr1:203695270(+) A-I      intronic chr1:203618648(+) A-I      intronic chr1:203603505(+) A-I      intronic chr1:203629719(+) A-I      intronic chr1:203603917(+) A-I      intronic chr1:203681452(+) A-I      intronic chr1:203618650(+) A-I      intronic chr1:203627015(+) A-I      intronic chr1:203604522(+) A-I      intronic chr1:203695470(+) A-I      intronic chr1:203694545(+) A-I      intronic chr1:203629751(+) A-I      intronic chr1:203602571(+) A-I      intronic chr1:203689080(+) A-I      intronic chr1:203629198(+) A-I      intronic chr1:203687691(+) A-I      intronic chr1:203690917(+) A-I      intronic chr1:203630177(+) A-I      intronic chr1:203629718(+) A-I      intronic chr1:203629713(+) A-I      intronic chr1:203694086(+) A-I      intronic chr1:203628120(+) A-I      intronic chr1:203634744(+) A-I      intronic chr1:203678109(+) A-I      intronic chr1:203687639(+) A-I      intronic chr1:203698025(+) A-I      intronic chr1:203602494(+) A-I      intronic chr1:203621082(+) A-I      intronic chr1:203629757(+) A-I      intronic chr1:203623854(+) A-I      intronic chr1:203616375(+) A-I      intronic chr1:203679359(+) A-I      intronic chr1:203626610(+) A-I      intronic chr1:203604527(+) A-I      intronic chr1:203627470(+) A-I      intronic chr1:203690936(+) A-I      intronic chr1:203604683(+) A-I      intronic chr1:203630073(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ATP2B4	chr1:203626610(+) A-I intron -    22327324 chr1:203626643(+) A-I intron -    22327324 chr1:203603868(+) A-G intron -    22484847 chr1:203679359(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ATP2B4	chr1:203596053-203596054(+) m6A 5'UTR       25456834//24981863 chr1:203652019-203652020(+) m6A 5'UTR       24284625 chr1:203652034-203652035(+) m6A 5'UTR       24284625 chr1:203652060-203652061(+) m6A 5'UTR       24284625//24981863 chr1:203652131-203652132(+) m6A 5'UTR       24284625//24209618//24981863//22608085 chr1:203652156-203652157(+) m6A 5'UTR       24284625//24209618//24981863//22608085 chr1:203652252-203652253(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:203652267-203652268(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:203652340-203652341(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:203652349-203652350(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:203652394-203652395(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:203652416-203652417(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:203652503-203652504(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:203652510-203652511(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:203667296-203667297(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr1:203667333-203667334(+) m6A CDS       24284625//24209618//24981863//22608085 chr1:203667364-203667365(+) m6A CDS       24209618 chr1:203671178-203671179(+) m6A CDS       24981863//27773535 chr1:203672854-203672855(+) m6A CDS       25456834 chr1:203702735-203702736(+) m6A 3'UTR//intron       - chr1:203702753-203702754(+) m6A 3'UTR//intron       - chr1:203708723-203708724(+) m6A 3'UTR//CDS       24284625//24981863 chr1:203708796-203708797(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:203708853-203708854(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:203708902-203708903(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:203708947-203708948(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:203708970-203708971(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:203709058-203709059(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:203709110-203709111(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:203709144-203709145(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:203709190-203709191(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr1:203709200-203709201(+) m6A 3'UTR       24284625//24981863//22608085 chr1:203709962-203709963(+) m6A 3'UTR       24981863//22608085 chr1:203709984-203709985(+) m6A 3'UTR       24981863//22608085 chr1:203709989-203709990(+) m6A 3'UTR       24981863//22608085 chr1:203710006-203710007(+) m6A 3'UTR       24981863//22608085 chr1:203710075-203710076(+) m6A 3'UTR       25456834 chr1:203710359-203710360(+) m6A 3'UTR       24284625 chr1:203710541-203710542(+) m6A 3'UTR       - chr1:203711687-203711688(+) m6A 3'UTR       - chr1:203711708-203711709(+) m6A 3'UTR       - chr1:203711727-203711728(+) m6A 3'UTR       - chr1:203711741-203711742(+) m6A 3'UTR       - chr1:203711796-203711797(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsv2-miR-H10	Exosome K562 cells     24460325
	ATP2B4	Chromatin K562 cells     - Cytosol K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H10
Interactor2: ATP2B4

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg