Detail Information

Basic Information:


  VIRBase ID:  

VHID00173390

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H9-3p:           CNPY4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H9-3p CNPY4
miRBase
Accession/Entrez ID		 MIMAT0014352 245812
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - PRAT4B

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CNPY4
chr7:99719462(+) A-I      intronic
chr7:99719457(+) A-I      intronic
chr7:99721405(+) A-I      intronic
chr7:99720803(+) A-I      intronic
chr7:99719325(+) A-I      intronic
chr7:99719324(+) A-I      intronic
chr7:99719315(+) A-I      intronic
chr7:99719268(+) A-I      intronic
chr7:99721404(+) A-I      intronic
chr7:99719253(+) A-I      intronic
chr7:99719251(+) A-I      intronic
chr7:99720801(+) A-I      intronic
chr7:99721680(+) A-I      intronic
chr7:99719418(+) A-I      intronic
chr7:99719456(+) A-I      intronic
chr7:99719427(+) A-I      intronic
chr7:99719419(+) A-I      intronic
chr7:99721576(+) A-I      intronic
chr7:99720806(+) A-I      intronic
chr7:99719225(+) A-I      intronic
chr7:99719233(+) A-I      intronic
chr7:99719614(+) A-I      intronic
chr7:99720782(+) A-I      intronic
chr7:99719248(+) A-I      intronic
chr7:99719623(+) A-I      intronic
chr7:99719249(+) A-I      intronic
chr7:99719655(+) A-I      intronic
chr7:99720709(+) A-I      intronic
chr7:99720766(+) A-I      intronic
chr7:99721476(+) A-I      intronic
chr7:99721417(+) A-I      intronic
chr7:99721325(+) A-I      intronic
chr7:99721319(+) A-I      intronic
chr7:99721273(+) A-I      intronic
chr7:99721499(+) A-I      intronic
chr7:99721590(+) A-I      intronic
chr7:99719585(+) A-I      intronic
chr7:99719579(+) A-I      intronic
chr7:99719575(+) A-I      intronic
chr7:99721377(+) A-I      intronic
chr7:99721244(+) A-I      intronic
chr7:99721594(+) A-I      intronic
chr7:99721639(+) A-I      intronic
chr7:99721657(+) A-I      intronic
chr7:99721174(+) A-I      intronic
chr7:99719441(+) A-I      intronic
chr7:99721672(+) A-I      intronic
chr7:99719410(+) A-I      intronic
chr7:99718862(+) A-I      intronic
chr7:99718866(+) A-I      intronic
chr7:99720952(+) A-I      intronic
chr7:99719598(+) A-I      intronic
chr7:99718959(+) A-I      intronic
chr7:99718982(+) A-I      intronic
chr7:99719157(+) A-I      intronic
chr7:99721591(+) A-I      intronic
chr7:99719171(+) A-I      intronic
chr7:99721593(+) A-I      intronic
chr7:99720800(+) A-I      intronic
chr7:99721599(+) A-I      intronic
chr7:99720922(+) A-I      intronic
chr7:99721328(+) A-I      intronic
chr7:99719200(+) A-I      intronic
chr7:99721345(+) A-I      intronic
chr7:99721386(+) A-I      intronic
chr7:99721596(+) A-I      intronic
chr7:99719562(+) A-I      intronic
chr7:99720914(+) A-I      intronic
chr7:99719552(+) A-I      intronic
chr7:99720910(+) A-I      intronic
chr7:99718952(+) A-I      intronic
chr7:99719526(+) A-I      intronic
chr7:99719486(+) A-I      intronic
chr7:99719471(+) A-I      intronic
chr7:99720907(+) A-I      intronic
chr7:99720877(+) A-I      intronic
chr7:99720872(+) A-I      intronic
chr7:99720804(+) A-I      intronic
chr7:99718901(+) A-I      intronic
chr7:99720890(+) A-I      intronic
chr7:99718827(+) A-I      intronic
chr7:99719140(+) A-I      intronic
chr7:99720736(+) A-I      intronic
chr7:99719337(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CNPY4
chr7:99718827(+) A-I intron -    15258596
chr7:99718891(+) A-I intron -    15258596
chr7:99718901(+) A-I intron -    15258596
chr7:99718927(+) A-I intron -    15258596

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CNPY4
chr7:99717306-99717307(+) m6A 5'UTR       24284625//24209618//24981863//22608085
chr7:99717372-99717373(+) m6A CDS       24284625//24209618//25456834//24981863//22608085
chr7:99717664-99717665(+) m6A 5'UTR//exon//intron       24209618//25456834//24981863//22608085
chr7:99717706-99717707(+) m6A 5'UTR//exon//intron       24209618//25456834//24981863//22608085
chr7:99717748-99717749(+) m6A 5'UTR//exon//intron       24284625//24209618//24981863//22608085
chr7:99717762-99717763(+) m6A 5'UTR//exon//intron       24284625//24209618//24981863//22608085
chr7:99717812-99717813(+) m6A 5'UTR//exon//intron       24284625//24209618//24981863//22608085
chr7:99717864-99717865(+) m6A 5'UTR//exon//intron       24284625//24981863//22608085
chr7:99717965-99717966(+) m6A 5'UTR//exon//intron       24284625//24981863
chr7:99718010-99718011(+) m6A 5'UTR//exon//intron       -
chr7:99719915-99719916(+) m6A 5'UTR//CDS//exon       24284625//24209618
chr7:99719987-99719988(+) m6A 5'UTR//CDS//exon       24284625//24209618
chr7:99720107-99720108(+) m6A 5'UTR//CDS//exon       24284625//24209618
chr7:99720153-99720154(+) m6A 5'UTR//CDS//exon       24209618
chr7:99720418-99720419(+) m6A 5'UTR//CDS//exon       24209618
chr7:99722142-99722143(+) m6A 3'UTR//CDS//exon       27773535
chr7:99722164-99722165(+) m6A 3'UTR//CDS//exon       27773535
chr7:99722176-99722177(+) m6A 3'UTR//CDS//exon       27773535
chr7:99722250-99722251(+) m6A 3'UTR//CDS//exon       24209618//25456834//24981863
chr7:99722345-99722346(+) Am intron       -
chr7:99722361-99722362(+) m6A 3'UTR//CDS//exon       24209618//25456834//24981863
chr7:99722367-99722368(+) m6A 3'UTR//CDS//exon       24209618//25456834//24981863
chr7:99722400-99722401(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863
chr7:99722458-99722459(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863
chr7:99722472-99722473(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863
chr7:99722489-99722490(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863
chr7:99722669-99722670(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085
chr7:99722729-99722730(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr7:99722881-99722882(+) m6A 3'UTR       24209618//24981863//22608085
chr7:99722908-99722909(+) m6A 3'UTR       24209618//24981863//22608085
chr7:99722963-99722964(+) m6A 3'UTR       24209618//24981863//22608085
chr7:99722981-99722982(+) m6A 3'UTR       24209618//24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CNPY4
Chromatin K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H9-3p
Interactor2: CNPY4

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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