Detail Information

Basic Information:


  VIRBase ID:  

VHID00172822

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H9-3p:           RHPN1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H9-3p RHPN1
miRBase
Accession/Entrez ID
MIMAT0014352 114822
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - ODF5//RHOPHILIN//RHPN

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RHPN1
chr8:144451033-144451034(+) m6A 5'UTR       -
chr8:144451133-144451134(+) m6A 5'UTR       -
chr8:144457828-144457829(+) m6A CDS//exon       -
chr8:144458804-144458805(+) m6A CDS//exon       -
chr8:144459592-144459593(+) m6A CDS//exon       -
chr8:144459605-144459606(+) m6A CDS//exon       -
chr8:144460874-144460875(+) m6A CDS//exon       -
chr8:144461191-144461192(+) m6A CDS//exon       24284625
chr8:144461508-144461509(+) m6A CDS//exon       24284625
chr8:144461532-144461533(+) m6A CDS//exon       24284625
chr8:144461637-144461638(+) m6A CDS//exon       24284625
chr8:144462028-144462029(+) m6A CDS//exon       -
chr8:144462073-144462074(+) m6A CDS//exon       -
chr8:144463841-144463842(+) m6A CDS//exon       24284625
chr8:144464041-144464042(+) m6A CDS//exon       24284625
chr8:144464125-144464126(+) m6A CDS//exon       24284625
chr8:144464609-144464610(+) m6A CDS//exon       24284625
chr8:144464674-144464675(+) m6A CDS//exon       24284625
chr8:144464743-144464744(+) m6A CDS//exon       24284625//24981863
chr8:144464897-144464898(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085
chr8:144464964-144464965(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085
chr8:144464973-144464974(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085
chr8:144465162-144465163(+) m6A 3'UTR//exon       24284625
chr8:144465266-144465267(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085
chr8:144465287-144465288(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085
chr8:144465307-144465308(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085
chr8:144465362-144465363(+) m6A 3'UTR//exon       24284625//24981863//22608085
chr8:144465701-144465702(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085
chr8:144465730-144465731(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085
chr8:144465744-144465745(+) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//22608085
chr8:144465767-144465768(+) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//22608085
chr8:144465896-144465897(+) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//27773536//22608085
chr8:144466006-144466007(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085
chr8:144466041-144466042(+) m6A 3'UTR//exon       24284625//25456834//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RHPN1
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H9-3p
Interactor2: RHPN1

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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