Basic Information:

  VIRBase ID:  

VHID00172622

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H9-3p:  MIMAT0014352          SHANK3:  NM_001372044     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H9-3p	SHANK3
miRBase Accession/Entrez ID	MIMAT0014352	85358
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DEL22q13.3//PROSAP2//PSAP2//SCZD15//SPANK-2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SHANK3	chr22:51147399(+) A-I      intronic chr22:51146652(+) A-I      intronic chr22:51146679(+) A-I      intronic chr22:51147437(+) A-I      intronic chr22:51147402(+) A-I      intronic chr22:51147393(+) A-I      intronic chr22:51147351(+) A-I      intronic chr22:51147448(+) A-I      intronic chr22:51147501(+) A-I      intronic chr22:51146522(+) A-I      intronic chr22:51147313(+) A-I      intronic chr22:51147375(+) A-I      intronic chr22:51147401(+) A-I      intronic chr22:51126077(+) A-I      intronic chr22:51147356(+) A-I      intronic chr22:51147472(+) A-I      intronic chr22:51147534(+) A-I      intronic chr22:51146705(+) A-I      intronic chr22:51146595(+) A-I      intronic chr22:51146533(+) A-I      intronic chr22:51147507(+) A-I      intronic chr22:51147400(+) A-I      intronic chr22:51147471(+) A-I      intronic chr22:51147305(+) A-I      intronic chr22:51146755(+) A-I      intronic chr22:51147318(+) A-I      intronic chr22:51145557(+) A-I      intronic chr22:51147413(+) A-I      intronic chr22:51147441(+) A-I      intronic chr22:51147502(+) A-I      intronic chr22:51146621(+) A-I      intronic chr22:51146756(+) A-I      intronic chr22:51147323(+) A-I      intronic chr22:51147319(+) A-I      intronic chr22:51147374(+) A-I      intronic chr22:51147345(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SHANK3	chr22:51137152-51137153(+) m6A CDS//exon       24284625//24209618 chr22:51142299-51142300(+) m6A CDS//exon       24284625//24209618 chr22:51154168-51154169(+) m6A CDS//exon       24209618 chr22:51158674-51158675(+) m6A CDS//exon       24209618 chr22:51158715-51158716(+) m6A CDS//exon       24209618 chr22:51158950-51158951(+) m6A CDS//exon       24209618 chr22:51159560-51159561(+) m6A CDS//exon       24284625//25456834//24981863 chr22:51159568-51159569(+) m6A CDS//exon       24284625//25456834//24981863 chr22:51159680-51159681(+) m6A CDS//exon       24284625//25456834//24981863 chr22:51159709-51159710(+) m6A CDS//exon       24284625//24981863 chr22:51159829-51159830(+) m6A CDS//exon       24284625//24981863 chr22:51159859-51159860(+) m6A CDS//exon       24284625//24981863 chr22:51160111-51160112(+) m6A CDS//exon       24284625 chr22:51160149-51160150(+) m6A CDS//exon       24284625 chr22:51160374-51160375(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr22:51160433-51160434(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr22:51160466-51160467(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr22:51160552-51160553(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr22:51160576-51160577(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr22:51160687-51160688(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr22:51160730-51160731(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr22:51160774-51160775(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr22:51160780-51160781(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr22:51160802-51160803(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr22:51160831-51160832(+) m6A CDS//exon       24284625//24209618//25456834//24981863 chr22:51169615-51169616(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr22:51169702-51169703(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr22:51169884-51169885(+) m6A 3'UTR//exon       24209618//25456834//24981863 chr22:51169957-51169958(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr22:51170051-51170052(+) m6A 3'UTR//exon       24209618//25456834//24981863 chr22:51170076-51170077(+) m6A 3'UTR//exon       24209618//25456834//24981863 chr22:51170108-51170109(+) m6A 3'UTR//exon       25456834//24981863 chr22:51170190-51170191(+) m6A 3'UTR//exon       24209618//24981863 chr22:51171434-51171435(+) Y 3'UTR       26075521

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SHANK3	Cytosol HCC cell line (HepG2)|HeLa-S3 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H9-3p
Interactor2: SHANK3

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg