Basic Information:

  VIRBase ID:  

VHID00172594

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H9-3p:  MIMAT0014352          RPUSD4:  NM_001144827     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H9-3p	RPUSD4
miRBase Accession/Entrez ID	MIMAT0014352	84881
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RPUSD4	chr11:126078989(-) A-I      intronic chr11:126079066(-) A-I      intronic chr11:126077582(-) A-I      intronic chr11:126076340(-) A-I      intronic chr11:126079065(-) A-I      intronic chr11:126079035(-) A-I      intronic chr11:126079025(-) A-I      intronic chr11:126079033(-) A-I      intronic chr11:126078959(-) A-I      intronic chr11:126079085(-) A-I      intronic chr11:126079138(-) A-I      intronic chr11:126079056(-) A-I      intronic chr11:126077671(-) A-I      intronic chr11:126079062(-) A-I      intronic chr11:126079118(-) A-I      intronic chr11:126077601(-) A-I      intronic chr11:126079101(-) A-I      intronic chr11:126076369(-) A-I      intronic chr11:126076395(-) A-I      intronic chr11:126078979(-) A-I      intronic chr11:126079112(-) A-I      intronic chr11:126077528(-) A-I      intronic chr11:126076328(-) A-I      intronic chr11:126078984(-) A-I      intronic chr11:126077677(-) A-I      intronic chr11:126077577(-) A-I      intronic chr11:126076202(-) A-I      intronic chr11:126079041(-) A-I      intronic chr11:126077597(-) A-I      intronic chr11:126079058(-) A-I      intronic chr11:126076330(-) A-I      intronic chr11:126079031(-) A-I      intronic chr11:126077672(-) A-I      intronic chr11:126079144(-) A-I      intronic chr11:126079051(-) A-I      intronic chr11:126077615(-) A-I      intronic chr11:126076390(-) A-I      intronic chr11:126077553(-) A-I      intronic chr11:126076389(-) A-I      intronic chr11:126076352(-) A-I      intronic chr11:126078965(-) A-I      intronic chr11:126077541(-) A-I      intronic chr11:126079123(-) A-I      intronic chr11:126079068(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RPUSD4	chr11:126077677(-) A-I intron -    22327324 chr11:126079041(-) A-I intron -    22327324 chr11:126079112(-) A-I intron -    22327324 chr11:126077553(-) A-G intron -    22484847 chr11:126077677(-) A-G intron -    22484847 chr11:126078965(-) A-G intron -    22484847 chr11:126079041(-) A-G intron -    22484847 chr11:126079051(-) A-G intron -    22484847 chr11:126079058(-) A-G intron -    22484847 chr11:126079112(-) A-G intron -    22484847 chr11:126079118(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RPUSD4	chr11:126072757-126072758(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//22608085 chr11:126072777-126072778(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//22608085 chr11:126072814-126072815(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27773535//22608085 chr11:126072828-126072829(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27773535//22608085 chr11:126072894-126072895(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085 chr11:126072955-126072956(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr11:126072982-126072983(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr11:126073008-126073009(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr11:126073029-126073030(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr11:126073116-126073117(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr11:126073184-126073185(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr11:126073207-126073208(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr11:126073226-126073227(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr11:126073271-126073272(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr11:126073309-126073310(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr11:126073343-126073344(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr11:126073414-126073415(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr11:126073432-126073433(-) m6A CDS//exon       24284625//24209618//27773535//22575960//22608085 chr11:126073513-126073514(-) m6A CDS//exon       24284625 chr11:126075631-126075632(-) m6A CDS//exon//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RPUSD4	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H9-3p
Interactor2: RPUSD4

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg