Detail Information

Basic Information:


  VIRBase ID:  

VHID00172489

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H9-3p:           SLA2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H9-3p SLA2
miRBase
Accession/Entrez ID		 MIMAT0014352 84174
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - C20orf156//MARS//SLAP-2//SLAP2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLA2
chr20:35248682(-) A-I      intronic
chr20:35247847(-) A-I      intronic
chr20:35247846(-) A-I      intronic
chr20:35247842(-) A-I      intronic
chr20:35257117(-) A-I      intronic
chr20:35257109(-) A-I      intronic
chr20:35257051(-) A-I      intronic
chr20:35253822(-) A-I      intronic
chr20:35248670(-) A-I      intronic
chr20:35253821(-) A-I      intronic
chr20:35253816(-) A-I      intronic
chr20:35253801(-) A-I      intronic
chr20:35253799(-) A-I      intronic
chr20:35253798(-) A-I      intronic
chr20:35253795(-) A-I      intronic
chr20:35253794(-) A-I      intronic
chr20:35247817(-) A-I      intronic
chr20:35253782(-) A-I      intronic
chr20:35253766(-) A-I      intronic
chr20:35253764(-) A-I      intronic
chr20:35245890(-) A-I      intronic
chr20:35248679(-) A-I      intronic
chr20:35245687(-) A-I      intronic
chr20:35247694(-) A-I      intronic
chr20:35247537(-) A-I      intronic
chr20:35249137(-) A-I      intronic
chr20:35273653(-) A-I      intronic
chr20:35271085(-) A-I      intronic
chr20:35269139(-) A-I      intronic
chr20:35269133(-) A-I      intronic
chr20:35269124(-) A-I      intronic
chr20:35269123(-) A-I      intronic
chr20:35269030(-) A-I      intronic
chr20:35269017(-) A-I      intronic
chr20:35266122(-) A-I      intronic
chr20:35266114(-) A-I      intronic
chr20:35266106(-) A-I      intronic
chr20:35265840(-) A-I      intronic
chr20:35265641(-) A-I      intronic
chr20:35258279(-) A-I      intronic
chr20:35258259(-) A-I      intronic
chr20:35247678(-) A-I      intronic
chr20:35258077(-) A-I      intronic
chr20:35257162(-) A-I      intronic
chr20:35257060(-) A-I      intronic
chr20:35254679(-) A-I      intronic
chr20:35253684(-) A-I      intronic
chr20:35252096(-) A-I      intronic
chr20:35252077(-) A-I      intronic
chr20:35250231(-) A-I      intronic
chr20:35249166(-) A-I      intronic
chr20:35247684(-) A-I      intronic
chr20:35247538(-) A-I      intronic
chr20:35244794(-) A-I      intronic
chr20:35244806(-) A-I      intronic
chr20:35245098(-) A-I      intronic
chr20:35247426(-) A-I      intronic
chr20:35245669(-) A-I      intronic
chr20:35245684(-) A-I      intronic
chr20:35258219(-) A-I      intronic
chr20:35254424(-) A-I      intronic
chr20:35248727(-) A-I      intronic
chr20:35259781(-) A-I      intronic
chr20:35247516(-) A-I      intronic
chr20:35245296(-) A-I      intronic
chr20:35261580(-) A-I      intronic
chr20:35245143(-) A-I      intronic
chr20:35246810(-) A-I      intronic
chr20:35258094(-) A-I      intronic
chr20:35247541(-) A-I      intronic
chr20:35245290(-) A-I      intronic
chr20:35247441(-) A-I      intronic
chr20:35245129(-) A-I      intronic
chr20:35249046(-) A-I      intronic
chr20:35245157(-) A-I      intronic
chr20:35258055(-) A-I      intronic
chr20:35265315(-) A-I      intronic
chr20:35270861(-) A-I      intronic
chr20:35245273(-) A-I      intronic
chr20:35259616(-) A-I      intronic
chr20:35255214(-) A-I      intronic
chr20:35252170(-) A-I      intronic
chr20:35253854(-) A-I      intronic
chr20:35244872(-) A-I      intronic
chr20:35254891(-) A-I      intronic
chr20:35252172(-) A-I      intronic
chr20:35253688(-) A-I      intronic
chr20:35266368(-) A-I      intronic
chr20:35259765(-) A-I      intronic
chr20:35245516(-) A-I      intronic
chr20:35251550(-) A-I      intronic
chr20:35247393(-) A-I      intronic
chr20:35254423(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLA2
chr20:35240783-35240784(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr20:35240812-35240813(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr20:35240839-35240840(-) m6A 3'UTR       24284625//27773535//22608085
chr20:35240871-35240872(-) m6A 3'UTR       24284625//27773535//22608085
chr20:35240905-35240906(-) m6A 3'UTR       24284625//27773535//22608085
chr20:35240921-35240922(-) m6A 3'UTR       24284625//27773535//22608085
chr20:35274406-35274407(-) m6A 5'UTR       27371828
chr20:35274426-35274427(-) m6A 5'UTR       27371828
chr20:35274440-35274441(-) m6A 5'UTR       27371828
chr20:35274576-35274577(-) m6A 5'UTR       27371828
chr20:35274612-35274613(-) m6A 5'UTR       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SLA2
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H9-3p
Interactor2: SLA2

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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