Basic Information:

  VIRBase ID:  

VHID00172257

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H9-3p:  MIMAT0014352          PIP4K2C:  NM_024779     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H9-3p	PIP4K2C
miRBase Accession/Entrez ID	MIMAT0014352	79837
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	PIP5K2C

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PIP4K2C	chr12:57992210(+) A-I      intronic chr12:57989497(+) A-I      intronic chr12:57991891(+) A-I      intronic chr12:57992108(+) A-I      intronic chr12:57991929(+) A-I      intronic chr12:57991946(+) A-I      intronic chr12:57992048(+) A-I      intronic chr12:57993846(+) A-I      intronic chr12:57991947(+) A-I      intronic chr12:57991914(+) A-I      intronic chr12:57988530(+) A-I      intronic chr12:57991883(+) A-I      intronic chr12:57990276(+) A-I      intronic chr12:57991877(+) A-I      intronic chr12:57992206(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PIP4K2C	chr12:57991883(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PIP4K2C	chr12:57985069-57985070(+) m6A 5'UTR       24981863 chr12:57985153-57985154(+) m6A CDS       24284625 chr12:57985162-57985163(+) m1A CDS       26863196//26863410 chr12:57988964-57988965(+) m6A 3'UTR//CDS       - chr12:57989686-57989687(+) m6A 3'UTR//CDS//intron       - chr12:57995392-57995393(+) m6A 3'UTR       24284625//24981863 chr12:57995435-57995436(+) m6A 3'UTR//intron       24284625//24981863 chr12:57995743-57995744(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr12:57995753-57995754(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr12:57995761-57995762(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr12:57995808-57995809(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr12:57995845-57995846(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr12:57996006-57996007(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22608085 chr12:57996016-57996017(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22608085 chr12:57996188-57996189(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr12:57996207-57996208(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr12:57996213-57996214(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr12:57996641-57996642(+) m6A 3'UTR       24209618 chr12:57996820-57996821(+) m6A 3'UTR       24284625//24981863//26404942 chr12:57996957-57996958(+) m6A 3'UTR       24981863//27773535//22608085 chr12:57997013-57997014(+) m6A 3'UTR       24981863//27773535//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PIP4K2C	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H9-3p
Interactor2: PIP4K2C

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg