Basic Information:

  VIRBase ID:  

VHID00171970

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H9-3p:  MIMAT0014352          CACTIN:  NM_001080543     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H9-3p	CACTIN
miRBase Accession/Entrez ID	MIMAT0014352	58509
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C19orf29//fSAPc//NY-REN-24

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CACTIN	chr19:3625163(-) A-I      intronic chr19:3623405(-) A-I      intronic chr19:3623022(-) A-I      intronic chr19:3616789(-) A-I      intronic chr19:3623023(-) A-I      intronic chr19:3622331(-) A-I      intronic chr19:3625027(-) A-I      intronic chr19:3622110(-) A-I      intronic chr19:3625071(-) A-I      intronic chr19:3622279(-) A-I      intronic chr19:3625089(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CACTIN	chr19:3610735-3610736(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22608085 chr19:3610781-3610782(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr19:3610802-3610803(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr19:3610844-3610845(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr19:3610882-3610883(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536 chr19:3610999-3611000(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27371828//27773536 chr19:3611030-3611031(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27371828//27773536 chr19:3611179-3611180(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr19:3611279-3611280(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr19:3611298-3611299(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr19:3611309-3611310(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr19:3611344-3611345(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr19:3611469-3611470(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr19:3611603-3611604(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr19:3611705-3611706(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr19:3611713-3611714(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr19:3612044-3612045(-) m6A 3'UTR//CDS//exon       24284625 chr19:3612230-3612231(-) m6A 3'UTR//CDS//exon       24284625//27773535//27371828//27773536//22575960 chr19:3612386-3612387(-) m6A 3'UTR//CDS//exon       24284625//27371828//27773536//22575960 chr19:3613099-3613100(-) m6A 3'UTR//CDS//exon       24284625//24209618//27371828//27773536 chr19:3613110-3613111(-) m6A 3'UTR//CDS//exon       24284625//24209618//27371828//27773536 chr19:3613207-3613208(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27371828//27773536 chr19:3613538-3613539(-) m6A 3'UTR//CDS//exon       24284625//24209618//27371828//27773536 chr19:3614451-3614452(-) m6A CDS//exon       24284625//24209618//27371828//27773536 chr19:3614521-3614522(-) m6A CDS//exon//intron       24284625//27371828//27773536 chr19:3614617-3614618(-) m6A exon//intron       24284625//27371828//27773536 chr19:3614677-3614678(-) m6A exon//intron       24284625 chr19:3620154-3620155(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536 chr19:3620173-3620174(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536 chr19:3620726-3620727(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536 chr19:3620744-3620745(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536 chr19:3620787-3620788(-) m1A CDS//exon       26863196 chr19:3620893-3620894(-) m6A exon//intron       24284625//24209618//27773535//27371828//27773536 chr19:3623719-3623720(-) m6A CDS       24209618//24981863//27371828//27773536 chr19:3624061-3624062(-) m6A CDS       24284625//24209618//27371828//27773536 chr19:3626653-3626654(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960 chr19:3626749-3626750(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CACTIN	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H9-3p
Interactor2: CACTIN

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg