Basic Information:

  VIRBase ID:  

VHID00170705

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H9-3p:  MIMAT0014352          PACSIN2:  NM_001349970     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H9-3p	PACSIN2
miRBase Accession/Entrez ID	MIMAT0014352	11252
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SDPII

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PACSIN2	chr22:43383743(-) A-I      intronic chr22:43260988(-) A-I      intronic chr22:43256561(-) A-I      intronic chr22:43383745(-) A-I      intronic chr22:43256560(-) A-I      intronic chr22:43256553(-) A-I      intronic chr22:43383721(-) A-I      intronic chr22:43256541(-) A-I      intronic chr22:43256535(-) A-I      intronic chr22:43403449(-) A-I      intronic chr22:43256525(-) A-I      intronic chr22:43256544(-) A-I      intronic chr22:43383732(-) A-I      intronic chr22:43403459(-) A-I      intronic chr22:43403503(-) A-I      intronic chr22:43408787(-) A-I      intronic chr22:43408791(-) A-I      intronic chr22:43408835(-) A-I      intronic chr22:43383716(-) A-I      intronic chr22:43408830(-) A-I      intronic chr22:43408803(-) A-I      intronic chr22:43260079(-) A-I      intronic chr22:43260078(-) A-I      intronic chr22:43260064(-) A-I      intronic chr22:43257987(-) A-I      intronic chr22:43257977(-) A-I      intronic chr22:43257975(-) A-I      intronic chr22:43257888(-) A-I      intronic chr22:43257884(-) A-I      intronic chr22:43257861(-) A-I      intronic chr22:43257528(-) A-I      intronic chr22:43257412(-) A-I      intronic chr22:43257390(-) A-I      intronic chr22:43257386(-) A-I      intronic chr22:43257385(-) A-I      intronic chr22:43257355(-) A-I      intronic chr22:43257331(-) A-I      intronic chr22:43257318(-) A-I      intronic chr22:43254597(-) A-I      intronic chr22:43254452(-) A-I      intronic chr22:43409040(-) A-I      intronic chr22:43408976(-) A-I      intronic chr22:43408796(-) A-I      intronic chr22:43408688(-) A-I      intronic chr22:43408574(-) A-I      intronic chr22:43408142(-) A-I      intronic chr22:43407983(-) A-I      intronic chr22:43407971(-) A-I      intronic chr22:43406715(-) A-I      intronic chr22:43406629(-) A-I      intronic chr22:43406608(-) A-I      intronic chr22:43406604(-) A-I      intronic chr22:43406597(-) A-I      intronic chr22:43406108(-) A-I      intronic chr22:43406092(-) A-I      intronic chr22:43406080(-) A-I      intronic chr22:43406069(-) A-I      intronic chr22:43406046(-) A-I      intronic chr22:43404527(-) A-I      intronic chr22:43404510(-) A-I      intronic chr22:43404489(-) A-I      intronic chr22:43404484(-) A-I      intronic chr22:43404450(-) A-I      intronic chr22:43403514(-) A-I      intronic chr22:43403512(-) A-I      intronic chr22:43403426(-) A-I      intronic chr22:43403418(-) A-I      intronic chr22:43403416(-) A-I      intronic chr22:43403400(-) A-I      intronic chr22:43403333(-) A-I      intronic chr22:43403318(-) A-I      intronic chr22:43403308(-) A-I      intronic chr22:43403291(-) A-I      intronic chr22:43402752(-) A-I      intronic chr22:43402738(-) A-I      intronic chr22:43402578(-) A-I      intronic chr22:43402577(-) A-I      intronic chr22:43402576(-) A-I      intronic chr22:43399603(-) A-I      intronic chr22:43399546(-) A-I      intronic chr22:43399465(-) A-I      intronic chr22:43399461(-) A-I      intronic chr22:43399442(-) A-I      intronic chr22:43389171(-) A-I      intronic chr22:43389004(-) A-I      intronic chr22:43388948(-) A-I      intronic chr22:43385507(-) A-I      intronic chr22:43385441(-) A-I      intronic chr22:43385164(-) A-I      intronic chr22:43385158(-) A-I      intronic chr22:43385136(-) A-I      intronic chr22:43385131(-) A-I      intronic chr22:43385050(-) A-I      intronic chr22:43385039(-) A-I      intronic chr22:43385007(-) A-I      intronic chr22:43385001(-) A-I      intronic chr22:43384105(-) A-I      intronic chr22:43384084(-) A-I      intronic chr22:43384080(-) A-I      intronic chr22:43383998(-) A-I      intronic chr22:43383614(-) A-I      intronic chr22:43383585(-) A-I      intronic chr22:43381270(-) A-I      intronic chr22:43381250(-) A-I      intronic chr22:43381226(-) A-I      intronic chr22:43381222(-) A-I      intronic chr22:43381130(-) A-I      intronic chr22:43381118(-) A-I      intronic chr22:43381062(-) A-I      intronic chr22:43381056(-) A-I      intronic chr22:43380069(-) A-I      intronic chr22:43379321(-) A-I      intronic chr22:43379223(-) A-I      intronic chr22:43379199(-) A-I      intronic chr22:43379157(-) A-I      intronic chr22:43379131(-) A-I      intronic chr22:43368850(-) A-I      intronic chr22:43363794(-) A-I      intronic chr22:43363772(-) A-I      intronic chr22:43362356(-) A-I      intronic chr22:43362276(-) A-I      intronic chr22:43362264(-) A-I      intronic chr22:43362254(-) A-I      intronic chr22:43362183(-) A-I      intronic chr22:43350500(-) A-I      intronic chr22:43350193(-) A-I      intronic chr22:43350010(-) A-I      intronic chr22:43350004(-) A-I      intronic chr22:43348945(-) A-I      intronic chr22:43348944(-) A-I      intronic chr22:43348938(-) A-I      intronic chr22:43348917(-) A-I      intronic chr22:43348891(-) A-I      intronic chr22:43348850(-) A-I      intronic chr22:43348806(-) A-I      intronic chr22:43348765(-) A-I      intronic chr22:43348716(-) A-I      intronic chr22:43332030(-) A-I      intronic chr22:43331994(-) A-I      intronic chr22:43331086(-) A-I      intronic chr22:43331060(-) A-I      intronic chr22:43331050(-) A-I      intronic chr22:43330994(-) A-I      intronic chr22:43330979(-) A-I      intronic chr22:43383598(-) A-I      intronic chr22:43330969(-) A-I      intronic chr22:43323787(-) A-I      intronic chr22:43323786(-) A-I      intronic chr22:43323769(-) A-I      intronic chr22:43323709(-) A-I      intronic chr22:43323690(-) A-I      intronic chr22:43322752(-) A-I      intronic chr22:43321439(-) A-I      intronic chr22:43321320(-) A-I      intronic chr22:43321031(-) A-I      intronic chr22:43320930(-) A-I      intronic chr22:43320917(-) A-I      intronic chr22:43320891(-) A-I      intronic chr22:43320002(-) A-I      intronic chr22:43319966(-) A-I      intronic chr22:43319929(-) A-I      intronic chr22:43319798(-) A-I      intronic chr22:43319572(-) A-I      intronic chr22:43319566(-) A-I      intronic chr22:43317948(-) A-I      intronic chr22:43317882(-) A-I      intronic chr22:43317877(-) A-I      intronic chr22:43317873(-) A-I      intronic chr22:43317296(-) A-I      intronic chr22:43317207(-) A-I      intronic chr22:43313851(-) A-I      intronic chr22:43313849(-) A-I      intronic chr22:43313834(-) A-I      intronic chr22:43313509(-) A-I      intronic chr22:43313502(-) A-I      intronic chr22:43286707(-) A-I      intronic chr22:43286624(-) A-I      intronic chr22:43286558(-) A-I      intronic chr22:43286206(-) A-I      intronic chr22:43286196(-) A-I      intronic chr22:43286190(-) A-I      intronic chr22:43286185(-) A-I      intronic chr22:43286184(-) A-I      intronic chr22:43286080(-) A-I      intronic chr22:43286075(-) A-I      intronic chr22:43286070(-) A-I      intronic chr22:43271129(-) A-I      intronic chr22:43262800(-) A-I      intronic chr22:43262799(-) A-I      intronic chr22:43261020(-) A-I      intronic chr22:43261015(-) A-I      intronic chr22:43261002(-) A-I      intronic chr22:43260238(-) A-I      intronic chr22:43260220(-) A-I      intronic chr22:43260141(-) A-I      intronic chr22:43408927(-) A-I      intronic chr22:43407994(-) A-I      intronic chr22:43380264(-) A-I      intronic chr22:43380257(-) A-I      intronic chr22:43375338(-) A-I      intronic chr22:43320852(-) A-I      intronic chr22:43380091(-) A-I      intronic chr22:43408029(-) A-I      intronic chr22:43384074(-) A-I      intronic chr22:43257363(-) A-I      intronic chr22:43408934(-) A-I      intronic chr22:43380045(-) A-I      intronic chr22:43376337(-) A-I      intronic chr22:43402774(-) A-I      intronic chr22:43385084(-) A-I      intronic chr22:43317249(-) A-I      intronic chr22:43403401(-) A-I      intronic chr22:43383882(-) A-I      intronic chr22:43380141(-) A-I      intronic chr22:43271232(-) A-I      intronic chr22:43380074(-) A-I      intronic chr22:43402709(-) A-I      intronic chr22:43385709(-) A-I      intronic chr22:43321403(-) A-I      intronic chr22:43321220(-) A-I      intronic chr22:43402071(-) A-I      intronic chr22:43406013(-) A-I      intronic chr22:43323705(-) A-I      intronic chr22:43380145(-) A-I      intronic chr22:43403425(-) A-I      intronic chr22:43408039(-) A-I      intronic chr22:43407959(-) A-I      intronic chr22:43403488(-) A-I      intronic chr22:43271430(-) A-I      intronic chr22:43319860(-) A-I      intronic chr22:43383999(-) A-I      intronic chr22:43406568(-) A-I      intronic chr22:43384025(-) A-I      intronic chr22:43350095(-) A-I      intronic chr22:43408838(-) A-I      intronic chr22:43271403(-) A-I      intronic chr22:43260767(-) A-I      intronic chr22:43399420(-) A-I      intronic chr22:43409018(-) A-I      intronic chr22:43385428(-) A-I      intronic chr22:43406654(-) A-I      intronic chr22:43403398(-) A-I      intronic chr22:43257840(-) A-I      intronic chr22:43408271(-) A-I      intronic chr22:43406014(-) A-I      intronic chr22:43402673(-) A-I      intronic chr22:43389023(-) A-I      intronic chr22:43330956(-) A-I      intronic chr22:43403495(-) A-I      intronic chr22:43384978(-) A-I      intronic chr22:43319863(-) A-I      intronic chr22:43399607(-) A-I      intronic chr22:43270258(-) A-I      intronic chr22:43270238(-) A-I      intronic chr22:43270274(-) A-I      intronic chr22:43254602(-) A-I      intronic chr22:43323347(-) A-I      intronic chr22:43385695(-) A-I      intronic chr22:43257947(-) A-I      intronic chr22:43321039(-) A-I      intronic chr22:43385010(-) A-I      intronic chr22:43271954(-) A-I      intronic chr22:43385422(-) A-I      intronic chr22:43407783(-) A-I      intronic chr22:43260528(-) A-I      intronic chr22:43403404(-) A-I      intronic chr22:43402655(-) A-I      intronic chr22:43350412(-) A-I      intronic chr22:43271952(-) A-I      intronic chr22:43348476(-) A-I      intronic chr22:43363861(-) A-I      intronic chr22:43319808(-) A-I      intronic chr22:43258020(-) A-I      intronic chr22:43317243(-) A-I      intronic chr22:43384023(-) A-I      intronic chr22:43385034(-) A-I      intronic chr22:43313430(-) A-I      intronic chr22:43409048(-) A-I      intronic chr22:43406153(-) A-I      intronic chr22:43383812(-) A-I      intronic chr22:43258046(-) A-I      intronic chr22:43254581(-) A-I      intronic chr22:43316901(-) A-I      intronic chr22:43256633(-) A-I      intronic chr22:43406043(-) A-I      intronic chr22:43408755(-) A-I      intronic chr22:43348457(-) A-I      intronic chr22:43270299(-) A-I      intronic chr22:43385180(-) A-I      intronic chr22:43406342(-) A-I      intronic chr22:43260088(-) A-I      intronic chr22:43376357(-) A-I      intronic chr22:43408991(-) A-I      intronic chr22:43331963(-) A-I      intronic chr22:43385046(-) A-I      intronic chr22:43402745(-) A-I      intronic chr22:43332654(-) A-I      intronic chr22:43270304(-) A-I      intronic chr22:43257369(-) A-I      intronic chr22:43409001(-) A-I      intronic chr22:43257789(-) A-I      intronic chr22:43402641(-) A-I      intronic chr22:43403399(-) A-I      intronic chr22:43317282(-) A-I      intronic chr22:43380117(-) A-I      intronic chr22:43350032(-) A-I      intronic chr22:43379237(-) A-I      intronic chr22:43332094(-) A-I      intronic chr22:43385720(-) A-I      intronic chr22:43406113(-) A-I      intronic chr22:43406079(-) A-I      intronic chr22:43381090(-) A-I      intronic chr22:43408038(-) A-I      intronic chr22:43321386(-) A-I      intronic chr22:43323415(-) A-I      intronic chr22:43407788(-) A-I      intronic chr22:43402713(-) A-I      intronic chr22:43408144(-) A-I      intronic chr22:43269933(-) A-I      intronic chr22:43408249(-) A-I      intronic chr22:43261353(-) A-I      intronic chr22:43407908(-) A-I      intronic chr22:43257790(-) A-I      intronic chr22:43270326(-) A-I      intronic chr22:43338213(-) A-I      intronic chr22:43257962(-) A-I      intronic chr22:43406040(-) A-I      intronic chr22:43256634(-) A-I      intronic chr22:43383964(-) A-I      intronic chr22:43258535(-) A-I      intronic chr22:43261417(-) A-I      intronic chr22:43385248(-) A-I      intronic chr22:43408833(-) A-I      intronic chr22:43286664(-) A-I      intronic chr22:43408848(-) A-I      intronic chr22:43286674(-) A-I      intronic chr22:43381247(-) A-I      intronic chr22:43408259(-) A-I      intronic chr22:43408569(-) A-I      intronic chr22:43385696(-) A-I      intronic chr22:43389047(-) A-I      intronic chr22:43402782(-) A-I      intronic chr22:43403421(-) A-I      intronic chr22:43270069(-) A-I      intronic chr22:43323348(-) A-I      intronic chr22:43313904(-) A-I      intronic chr22:43262700(-) A-I      intronic chr22:43270047(-) A-I      intronic chr22:43406459(-) A-I      intronic chr22:43323866(-) A-I      intronic chr22:43383741(-) A-I      intronic chr22:43350147(-) A-I      intronic chr22:43253879(-) A-I      intronic chr22:43381143(-) A-I      intronic chr22:43379007(-) A-I      intronic chr22:43408770(-) A-I      intronic chr22:43321323(-) A-I      intronic chr22:43379488(-) A-I      intronic chr22:43406294(-) A-I      intronic chr22:43331203(-) A-I      intronic chr22:43286596(-) A-I      intronic chr22:43406016(-) A-I      intronic chr22:43407896(-) A-I      intronic chr22:43385404(-) A-I      intronic chr22:43321241(-) A-I      intronic chr22:43317265(-) A-I      intronic chr22:43409055(-) A-I      intronic chr22:43254478(-) A-I      intronic chr22:43384954(-) A-I      intronic chr22:43320957(-) A-I      intronic chr22:43255911(-) A-I      intronic chr22:43321410(-) A-I      intronic chr22:43316937(-) A-I      intronic chr22:43380160(-) A-I      intronic chr22:43319936(-) A-I      intronic chr22:43402638(-) A-I      intronic chr22:43332110(-) A-I      intronic chr22:43403477(-) A-I      intronic chr22:43260707(-) A-I      intronic chr22:43270046(-) A-I      intronic chr22:43402785(-) A-I      intronic chr22:43408839(-) A-I      intronic chr22:43348525(-) A-I      intronic chr22:43270220(-) A-I      intronic chr22:43385704(-) A-I      intronic chr22:43255915(-) A-I      intronic chr22:43406129(-) A-I      intronic chr22:43404528(-) A-I      intronic chr22:43384047(-) A-I      intronic chr22:43317281(-) A-I      intronic chr22:43376354(-) A-I      intronic chr22:43331137(-) A-I      intronic chr22:43348837(-) A-I      intronic chr22:43319877(-) A-I      intronic chr22:43258047(-) A-I      intronic chr22:43321242(-) A-I      intronic chr22:43357748(-) A-I      intronic chr22:43269941(-) A-I      intronic chr22:43385259(-) A-I      intronic chr22:43402672(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PACSIN2	chr22:43267336(-) A-I exon 3'UTR    21960545 chr22:43379741(-) A-I intron -    21960545 chr22:43402071(-) A-I intron -    21960545 chr22:43350949(-) A-G intron -    22484847 chr22:43270046(-) A-G intron -    22484847 chr22:43270186(-) T-C intron -    22484847 chr22:43270299(-) A-G intron -    22484847 chr22:43271232(-) A-G intron -    22484847 chr22:43271514(-) A-G intron -    22484847 chr22:43380091(-) A-G intron -    22484847 chr22:43383718(-) A-G intron -    22484847 chr22:43403398(-) A-G intron -    22484847 chr22:43403421(-) A-G intron -    22484847 chr22:43403425(-) A-G intron -    22484847 chr22:43406294(-) A-G intron -    22484847 chr22:43408833(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PACSIN2	chr22:43265794-43265795(-) m6A 3'UTR//intron       27773535 chr22:43265892-43265893(-) Y 3'UTR//intron       26075521 chr22:43265907-43265908(-) m6A 3'UTR//intron       27773535 chr22:43266026-43266027(-) m6A 3'UTR//intron       24284625 chr22:43266984-43266985(-) m6A 3'UTR//intron       24284625//24209618//27773535 chr22:43267147-43267148(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085 chr22:43267201-43267202(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr22:43267351-43267352(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr22:43267414-43267415(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr22:43272246-43272247(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960 chr22:43272319-43272320(-) m6A CDS       24284625//27773535//27371828//27773536 chr22:43275087-43275088(-) m6A CDS       24284625//27773535//27773536 chr22:43275150-43275151(-) m6A CDS       24284625//27773535//27773536 chr22:43275161-43275162(-) m6A CDS       24284625//27773535//27773536 chr22:43278205-43278206(-) m6A CDS       24284625//27773535//27773536 chr22:43278250-43278251(-) m6A CDS       27773535 chr22:43280409-43280410(-) m6A CDS       27371828 chr22:43280502-43280503(-) m6A CDS       24981863//26404942//27371828 chr22:43280534-43280535(-) m6A CDS       24981863//28052920//26404942//27773535//27371828 chr22:43284682-43284683(-) m6A CDS       24981863//28052920//27773535//27371828//27773536 chr22:43284702-43284703(-) m6A CDS       24981863//28052920//27773535//27371828//27773536 chr22:43284721-43284722(-) m6A CDS       24981863//28052920//27773535//27371828//27773536 chr22:43287014-43287015(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536 chr22:43287064-43287065(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536//22575960 chr22:43287074-43287075(-) Am CDS       - chr22:43287173-43287174(-) m6A CDS       24981863//27773535//27371828//22575960 chr22:43289551-43289552(-) m6A CDS//exon       24981863//27371828 chr22:43289600-43289601(-) m6A CDS//exon       27371828 chr22:43289611-43289612(-) m6A CDS//exon       27371828 chr22:43305467-43305468(-) m6A exon//intron       27371828 chr22:43341803-43341804(-) m6A 5'UTR//intron       24209618//25456834//24981863//27371828 chr22:43341808-43341809(-) m6A 5'UTR//intron       24209618//25456834//24981863//27371828 chr22:43341867-43341868(-) m6A 5'UTR//intron       24209618//25456834//24981863//27371828 chr22:43342961-43342962(-) m6A 5'UTR//intron       27773535 chr22:43355763-43355764(-) m6A 5'UTR//intron       24981863 chr22:43355877-43355878(-) m6A 5'UTR//intron       24981863 chr22:43355888-43355889(-) m6A 5'UTR//intron       24981863 chr22:43407511-43407512(-) Cm intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PACSIN2	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Insoluble cytoplasm K562 cells     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H9-3p
Interactor2: PACSIN2

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg