Basic Information:

  VIRBase ID:  

VHID00170150

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H9-3p:  MIMAT0014352          SOCS3:  NM_001378932     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H9-3p	SOCS3
miRBase Accession/Entrez ID	MIMAT0014352	9021
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ATOD4//CIS3//Cish3//SOCS-3//SSI-3//SSI3

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SOCS3	chr17:76352903-76352904(-) m6A 3'UTR       24981863//27773535 chr17:76352939-76352940(-) m6A 3'UTR       24284625//24981863//27773535 chr17:76352966-76352967(-) m6A 3'UTR       24284625//24981863//27773535 chr17:76353177-76353178(-) m6A 3'UTR       24284625 chr17:76353229-76353230(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828 chr17:76353316-76353317(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828 chr17:76353479-76353480(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535 chr17:76353537-76353538(-) m6A 3'UTR       24284625//24209618//25456834//27773535 chr17:76353590-76353591(-) m6A 3'UTR       24284625//24209618//25456834//27773535 chr17:76353670-76353671(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535 chr17:76353702-76353703(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535 chr17:76353874-76353875(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828 chr17:76353887-76353888(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828 chr17:76353920-76353921(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828 chr17:76354069-76354070(-) Am 3'UTR       - chr17:76354095-76354096(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr17:76354122-76354123(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr17:76354135-76354136(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr17:76354154-76354155(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr17:76354164-76354165(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr17:76354182-76354183(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr17:76354189-76354190(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr17:76354325-76354326(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr17:76354370-76354371(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr17:76354520-76354521(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr17:76354571-76354572(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960 chr17:76354590-76354591(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960 chr17:76354750-76354751(-) m6A CDS       24284625//24209618//24981863//22575960 chr17:76354901-76354902(-) m6A CDS       24284625//24981863//22575960 chr17:76354908-76354909(-) m6A CDS       24284625//24981863//27371828//22575960 chr17:76354920-76354921(-) m6A CDS       24284625//24981863//27371828//22575960 chr17:76354952-76354953(-) m6A CDS       24284625//24981863//27371828//22575960 chr17:76355006-76355007(-) m6A CDS       24284625//24981863//27371828//22575960 chr17:76355106-76355107(-) m6A CDS       24284625//27371828 chr17:76355126-76355127(-) m6A CDS       24284625//27371828 chr17:76355834-76355835(-) m6A 5'UTR//intron       27371828 chr17:76355847-76355848(-) m6A 5'UTR//intron       27371828 chr17:76355877-76355878(-) m6A 5'UTR//intron       27371828 chr17:76356144-76356145(-) m6A 5'UTR       24209618

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SOCS3	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H9-3p
Interactor2: SOCS3

Evidence Support:

Prediction-Evidence	miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg